Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1870g00002 ATGGCCGTTCAGGCTCAGTATCCTTCCAATATCCTCCTCCTCCACAATCACAACAACAACACCAGCAACCTACAACCAGATTATGACTCTTCCTTCCCACCTGCGGAAGCACTTCTTCATCAATCTCACATGTTATTCGCCAATGGAGCAGGTAGTACGAATCCTTCAAAAAGATCATCACAAAGTAGACCGCCCATTGCGGTTGCTCAGGCAGTCCCTAATGTTGTGAATTCTATGTCTCTGCAATCTCCTCAGCTTCTGGAACTCTCTCAACTGCATAATCACCACCACAATAGCGTCTCCACCGGCCTCCGCTTATCTTCCTTCGCCGATCAACAACCACTTCACTTGCTGCCGCACCAACGACAACAATCATCGCAGGATGCATCTCATTACTCCCCTGTATCGCCTCTTTTCTCTCAAGATTTTGCCTCTCAAATCAAACAGCACCGAGACGAAATCGACCAGTTTCTTCGAGCACAGGAAGCGGAATTACATCGGACATTGGCGGAGAAAAGGCAGAGACACTACCGAGTGCTACTCGCCACGGCGGAAGAAACCATGGCGAGGCGGTTGAGGGAGAAAGACCTGGAGGTGGAGAAAGTCACGCGCATGAACGCCCAGTTAGAGGCACGCGCCGCGCAACTGAGCGCCGAAGCACAGCTCTGGCAGGCAAAAGCAAAAGCACAAGAAGCAACGGCCGCTTCCTTACAGGCCCAACTGCAACAGGCCATGATGAATGGTACGGCCTCAGAAAAGAGAGATGAGGGTGGGCTGTCCTGCGCGGCGGGAGCCGACGACGCCGAGTCGGTATACGTTGACCCGGACCGATTCGAACCGACCGGACCGAAATGCAGAGGGTGTGGGAAGTGGGTGGCTTCGGTGGTGGTATTGCCGTGTCGGCATCTGTGCATGTGTGCCAAATGCGACGTCCATTTCCGAGCATGTCCGGTTTGTCTTTCCCTCAAAGAGTCAACCGTTGAGGTTTTCCTAACTTAG 999 0.5295 MAVQAQYPSNILLLHNHNNNTSNLQPDYDSSFPPAEALLHQSHMLFANGAGSTNPSKRSSQSRPPIAVAQAVPNVVNSMSLQSPQLLELSQLHNHHHNSVSTGLRLSSFADQQPLHLLPHQRQQSSQDASHYSPVSPLFSQDFASQIKQHRDEIDQFLRAQEAELHRTLAEKRQRHYRVLLATAEETMARRLREKDLEVEKVTRMNAQLEARAAQLSAEAQLWQAKAKAQEATAASLQAQLQQAMMNGTASEKRDEGGLSCAAGADDAESVYVDPDRFEPTGPKCRGCGKWVASVVVLPCRHLCMCAKCDVHFRACPVCLSLKESTVEVFLT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1870g00002 332 Gene3D - 294 330 - -
Pral1870g00002 332 Pfam Zinc finger, C3HC4 type (RING finger) 284 320 - -
Pral1870g00002 332 PIRSF SBP1_RNase_bind 1 332 IPR017066 -
Pral1870g00002 332 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 267 331 - -
Pral1870g00002 332 Coils Coil 192 247 - -
Pral1870g00002 332 Gene3D Death Domain, Fas 174 293 IPR011029 -
Pral1870g00002 332 CDD mRING-HC-C3HC5_CGRF1-like 283 319 - -
Pral1870g00002 332 ProSiteProfiles Zinc finger RING-type profile. 285 319 IPR001841 -
Pral1870g00002 332 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 55 329 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1870g00002 Pral-Chr1870 26022 27967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1870g00002 213 329 C3H Transcription Factor Family AT3G06140 27.419 3.21e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1870g00002 K19042 - gmx:100797727 335.88