Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1867g00002 ATGGGGAAGAAGAAACCCAAGGAGCCCAAGGAAAGCCCTAAAAGCAGCGGTGCTTCCGACATATTTAGCAAGCTATTTGGTAACGTATCGGAACAGGGCGCCAGCTCTTCTCTGTTCTCAGATAGCAACCCGTTTCGTAAGAAACCTCTTGAAACTAGTTCAAGTTTCGGCCTAACCAATAATACTGAAAACGCTGGTAGCGCGGTCTCCCATAGCCCCGATTCTGAAGTTTTGAAGAAGACGAAGAAAAGGAAAGAGAAGAACTCGTCTATTGATTCAGATAATGCCTTCGAAGCTTCGGGGAAGAAGTCGAAATCCGGTTCCGACTTGAACTCTCATTCGATTCCCAAATCAATTACAACACCGCAGGATGGCGAGGCCAAAGTGTCTGATTTGGGTGCACAGGCGACTGCGTTATCGAAGAATAAAAATATTGTGTCTGAGGAAGGCGAGGAGAAAGGTGAGCTTGTAAATGGTGACAAGGAGAAGAGAAAGAAGAACAAGAGAAAAAGGGACGACGTTGAGAAAGAGTGGGAATTAAAGAGGTATGGGGCAGTAGAGGAAGAGCAAGATCACGGGGAAGGCTTGGAGAAAAATGTCGTTGGGACCAAGAGGAAGACGGTGGATAATCCTGCTGACATGTTGGTAACGAATGAAGGTTTTGATGATGAGAAAAAGCTCTTGAGAACGATATTCATTGGGAATTTACCGCTCAAAGTGAAAAAGAAGAATTTATTGGTGGAGTTTAGGAAATTTGGGGAGGTTGAATCTGTGAGGATTCGTTCTGTCCCAATATTAGATACCAAAAAACCTAGAAAGGGAGCCATCCTTGCGAAGAAAATCAATGATGCTGGTGATAGCGTTCATGCATACATTGTTTTTAAGACAGAGCAGTCAGCTCAGGATTCTTTGTCCCATAACATGGCTGTGATCGGAGGAAATCACATACGTGTTGATAGAGCATGCCCACCTCGCAAGAAACTTAAAGGAGAGCATACTCCTCTGTATGATAACAAGAGAACTGTTTTTGTTGGCAACCTCCCATTTGATGTAAAGGATGAGGAACTCTATAAACTATTCTCTGGTACGTCCAACCTGGAATCCAGCATAGAAGCCGTTAGAGTCATTAGAGATCCTCATTTGAATATCGGGAAGGGTATCGCCTATGTGCTGTTTAAAACAAGGGAAGCTGCTAATTTTGTTGTTAGGAAACGTAACTTAAAGCTCCGAGACCGAGAGCTGAGACTGTGTCATGCAAGAGCGGATGCCACCCCATCCAAAAGGCCAAACTTGTCCCCACCACAAGCTTCTGGTACCCCTGCGAAGAAGGCGACGATGGCTGCAAGGTCTCCTTCAAGCGGTAATAACAGGACAAATAGAAAATCCAATATGTCTTACCAAGGTTTGCGGGCAAACAAAACAGTTGTCCATAAGAAATCAAAAACCCACGGAGGTGAGCAAACGACAGAGCGCAAGACGAAAAGACCAGCAGTTGCTGCCAGAAAGACTAAACTGAAAGCTAAATTGCTCAAGGAAGACGGTTCATCAAAACATGCAGGAAAGAAACGCAAGCTTGATAGTCGAACTCCAGACAGCTCTGTACAAAGTAAGAAAATTAAGAAGAATAGGTAG 1632 0.443 MGKKKPKEPKESPKSSGASDIFSKLFGNVSEQGASSSLFSDSNPFRKKPLETSSSFGLTNNTENAGSAVSHSPDSEVLKKTKKRKEKNSSIDSDNAFEASGKKSKSGSDLNSHSIPKSITTPQDGEAKVSDLGAQATALSKNKNIVSEEGEEKGELVNGDKEKRKKNKRKRDDVEKEWELKRYGAVEEEQDHGEGLEKNVVGTKRKTVDNPADMLVTNEGFDDEKKLLRTIFIGNLPLKVKKKNLLVEFRKFGEVESVRIRSVPILDTKKPRKGAILAKKINDAGDSVHAYIVFKTEQSAQDSLSHNMAVIGGNHIRVDRACPPRKKLKGEHTPLYDNKRTVFVGNLPFDVKDEELYKLFSGTSNLESSIEAVRVIRDPHLNIGKGIAYVLFKTREAANFVVRKRNLKLRDRELRLCHARADATPSKRPNLSPPQASGTPAKKATMAARSPSSGNNRTNRKSNMSYQGLRANKTVVHKKSKTHGGEQTTERKTKRPAVAARKTKLKAKLLKEDGSSKHAGKKRKLDSRTPDSSVQSKKIKKNR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1867g00002 543 MobiDBLite consensus disorder prediction 16 71 - -
Pral1867g00002 543 SUPERFAMILY RNA-binding domain, RBD 336 435 IPR035979 GO:0003676
Pral1867g00002 543 MobiDBLite consensus disorder prediction 75 92 - -
Pral1867g00002 543 MobiDBLite consensus disorder prediction 1 174 - -
Pral1867g00002 543 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 323 IPR000504 GO:0003723
Pral1867g00002 543 MobiDBLite consensus disorder prediction 419 543 - -
Pral1867g00002 543 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 340 421 IPR000504 GO:0003723
Pral1867g00002 543 MobiDBLite consensus disorder prediction 93 125 - -
Pral1867g00002 543 MobiDBLite consensus disorder prediction 505 543 - -
Pral1867g00002 543 SUPERFAMILY RNA-binding domain, RBD 224 330 IPR035979 GO:0003676
Pral1867g00002 543 MobiDBLite consensus disorder prediction 446 470 - -
Pral1867g00002 543 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 320 528 - -
Pral1867g00002 543 Gene3D - 333 427 IPR012677 -
Pral1867g00002 543 Gene3D - 136 332 IPR012677 -
Pral1867g00002 543 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 273 IPR000504 GO:0003723
Pral1867g00002 543 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 414 IPR000504 GO:0003723
Pral1867g00002 543 MobiDBLite consensus disorder prediction 145 174 - -
Pral1867g00002 543 CDD RRM2_RBM34 341 417 IPR034221 -
Pral1867g00002 543 SMART rrm1_1 230 319 IPR000504 GO:0003723
Pral1867g00002 543 SMART rrm1_1 341 417 IPR000504 GO:0003723
Pral1867g00002 543 MobiDBLite consensus disorder prediction 479 496 - -
Pral1867g00002 543 CDD RRM1_RBM34 229 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1867g00002 Pral-Chr1867 3500 7297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1867g00002 231 420 Eukaryotic Initiation Factors Gene Family AT1G22760 27.273 8.87e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1867g00002 K14837 - gmx:100784494 576.244