Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1865g00001 ATGAAGAGAAGTAACTCGTTCATGTGGTGGTTTGGAGTGACTTTGCAGCTTTGCTTCTTGCTTTTCAGTAGTTGCTCAGAGGGTTCCACCTCAATTAGAAGAGCTTTACTGAAGAATGACCTCACACCAGCGTCATCTTCTCCTGCTGTCAAACTGGACGAAAATCATAACCAGGTTGTGATAGATAATGGAATCGTCCAAGTCACGTTGTCCAAACCAGAAGGCTACGTCCTTGCAATATCTTATAATGGAATTGACAATGTCCTCGAAGCTAAAAACAAAGATCACAATAGAGGGTATCTTGACGTTGTTTGGGGAAATGATGATGGAGTTTTTCAGAAAATCGAGGGGACCAAGTTCTCAGTTATAGAGAAGACCGAAGATCAAGTGGAAGTCTCATTTTTAAGACAATGGACACATTCCATGGACGGATCTGTCCCTATAAAAATAGACATGAGGTATATAATGCGAAGAGGCAACTCGGGATATTACTCGTACGCAATATTTGAGCGGCCGGAAGGGTTTCCAGCGGCAAAGGTTTTCCAGATTAGGCTAGTTTATAAGCTCCGACAAGACAAGTTTCACTATATGGCCATATCAAGGCAGAGGCAAAGAGTAATGCCAACAGCTGAGGATAGAATCAATGGACAGGAACTGGCTTATCCTGAAGCTGTTCTCTTGACCACGGCCAAGAATCCAAGAATCAGAGGAGAGGTGGATGATAAATACCAGTACTCGGCGGAGAACAAAGAAAACTGTGTTCATGGATGGATTAGCTTTGACACAGAACCACACGCTGGCTTCTGGGTCATAGCACCAAGTAATGAGTTTCGCAATGGTGGGCCCCCCAAGCAGGATCTCACTTCTCATGTTGGCCCCACCTCTCTTGCGATGTTTGTGAGCACTCACTACGCTGGGACAAGTGTGTCCATTAATTTTGAAAAAGGGGAGACTTACAAGAAGGTGTTTGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCAGAAATAACAATATAGACACACTCTGGTCAGATGCTGTTCGACAGTTCAATGAGGAAGTCAGAAGCTGGCCCTATGATTTCCCTCGATCTCCAGATTTCATTCTACCCAATCAACGAGGAACAGTAAATGGGCGATTGCAAGTCCGAGATTGGTTCAAGAAGGGATGGGGAAACTTCAATGCTAAGTTTGCTTATGTTGGTCTAGCTCTGCCTGGAGAAAATGGATCATGGCAGAGAGAGAGCAAGGGTTATCAATTCTGGACTCAAGCTGATGAGAATGGCTACTTTGAAATCAAATCCGTTATACCAGGGGATTATAATTTGTATGCCTGGGTTCCTGGCTTTATTGGTGATTACAGATACAATACTACAATCACCATCAAACGAGGCGGTGTTATTAAATTGGGTTCACTTGTATATCGTCCTCCAAGGAATGGTCCTACCATATGGGAAATTGGTGTCCCAGATCGCTCAGCCGCAGAGTTATACGTACCAGACCCTGACCCTAAGCTCGTGAACAGATTGTACCAGAATGATGCACGAAACAAGTTTAGACAATATGGGTTGTGGGAACGTTACACTGACTTATATCCAGAGAAAGATCTAGTTTATAATGTTGGCGTGGATAAGCACGACAAGAATTGGTTTTTTGCTCATGTTGCCAGAAGGACAGGAAAGCAGACATACCAACCGACAACATGGCAGATTAAGTTTGAACTTGACGATGAAACATCATCAGGAAACTACACGTTTCAAGTGGCCTTAGCATCAGCAAATGAAGCCAGGTTTGGTTCAATGATGGGAGAGACGTTGATCCACACTATGAGACAGCAAGGATGGGAAAAGACAATGCGATAG 1860 0.4387 MKRSNSFMWWFGVTLQLCFLLFSSCSEGSTSIRRALLKNDLTPASSSPAVKLDENHNQVVIDNGIVQVTLSKPEGYVLAISYNGIDNVLEAKNKDHNRGYLDVVWGNDDGVFQKIEGTKFSVIEKTEDQVEVSFLRQWTHSMDGSVPIKIDMRYIMRRGNSGYYSYAIFERPEGFPAAKVFQIRLVYKLRQDKFHYMAISRQRQRVMPTAEDRINGQELAYPEAVLLTTAKNPRIRGEVDDKYQYSAENKENCVHGWISFDTEPHAGFWVIAPSNEFRNGGPPKQDLTSHVGPTSLAMFVSTHYAGTSVSINFEKGETYKKVFGPVFVYLNSASRNNNIDTLWSDAVRQFNEEVRSWPYDFPRSPDFILPNQRGTVNGRLQVRDWFKKGWGNFNAKFAYVGLALPGENGSWQRESKGYQFWTQADENGYFEIKSVIPGDYNLYAWVPGFIGDYRYNTTITIKRGGVIKLGSLVYRPPRNGPTIWEIGVPDRSAAELYVPDPDPKLVNRLYQNDARNKFRQYGLWERYTDLYPEKDLVYNVGVDKHDKNWFFAHVARRTGKQTYQPTTWQIKFELDDETSSGNYTFQVALASANEARFGSMMGETLIHTMRQQGWEKTMR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1865g00001 619 SUPERFAMILY Galactose mutarotase-like 52 345 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral1865g00001 619 Gene3D - 49 348 IPR014718 GO:0030246
Pral1865g00001 619 Pfam Polysaccharide lyase family 4, domain II 397 468 IPR029413 -
Pral1865g00001 619 Pfam Rhamnogalacturonate lyase family 45 239 IPR010325 -
Pral1865g00001 619 SUPERFAMILY Starch-binding domain-like 369 470 IPR013784 GO:0030246
Pral1865g00001 619 CDD RGL4_N 50 334 - -
Pral1865g00001 619 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Pral1865g00001 619 CDD RGL4_M 372 472 IPR029413 -
Pral1865g00001 619 SUPERFAMILY Galactose-binding domain-like 479 595 IPR008979 -
Pral1865g00001 619 FunFam Rhamnogalacturonate lyase B 370 469 - -
Pral1865g00001 619 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 598 - -
Pral1865g00001 619 Gene3D - 370 469 - -
Pral1865g00001 619 Pfam Polysaccharide lyase family 4, domain III 482 603 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1865g00001 Pral-Chr1865 5731 13371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1865g00001 50 592 Polysaccharide Lyase AT1G09890 55.455 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1865g00001 K18195 - gmx:100776664 783.097