Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1864g00001 ATGGGTGATTCTCCGAAGCACCCCAATCTGCCGGATAAAGATCGGGCGCCAAAAGCTCAAAGGCCATGCGACTACTGTGGCGACTCCACTGGTATTCTCTATTGTCGAGCTGATTCTGCGAAGCTCTGTTTCTCTTGTGATCGTGAAGTTCACTCTACCAACCAACTCTTCTCGAAGCACACTCGAGCTCTGCTCTGTGATGCCTGCAACGATTCGCCGGCCACAATACTCTGTTCTACCGAAAGCTCCGTTTTCTGCCAGAATTGTGATTGGGAACGGCACAACCTTTCGTTGTCTTTGGTGCACGATAGGAGGCCACTCGAGGGCTTCACTGGGTGTCCTTCCGTGAGTGAGTTGCTATCGATTCTGGGTTTTGAAGATTTGGGCAAGAAAGCCCTGTTTTCGACTGAGGATAGTGGAGTGTGTGACGTCGGTAGTGGCGATGGATTTGTGGGATCTGAGCTTGAGGAGGGCCTTTCGGACTTGTTCGTGTGGGATGCTCCTGCTGTTGTTAGCCTTGACGATTTGATAAGTTCTACAAGCTCGTCTCACAATTATCAGGCCATGGAGGTTCCTCCTCTGCCTAAGAACCGTAAGGCTGCTTGTGGGCAACACAAGGAAGAAATCATTAGTCAGCTTCGTGAGCTAGCAAAATCGGAGCCCATCCCTGAACAGTATTTAAAGTCGGCAAGCTTGTCCACAGGTTTTGAACATGAATTCGAGGCTGATATTTTTCCTTCGTACGAGAGAATAATACATATGCAGACAAATGTTTTAGAGGGGCATAGAGATAGTGAGACTGCAAATCAAGTTGTTCCTCCTAATACATCGTTGTATAAAGAAGAAGCTCTTGACTTCCATTCAGTTTCCACTGTCTGTGGGAATCATACCTATCTTAGCAGTGGAGGACAACTGAACTCTTTTAACTCTGAAAACTCATCGACGACCCCAAAAGTTGCTTCGTATGAGCTGACAAGTCAAGAAAGAGACTCTGCCTTATTACGTTACAAGGAGAAGAAGAGAACAAGAAGATATGACAGGCACATAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGACAAGAATCAAGGGTCGTTTTGCTAAGATAGAACACTGA 1122 0.4661 MGDSPKHPNLPDKDRAPKAQRPCDYCGDSTGILYCRADSAKLCFSCDREVHSTNQLFSKHTRALLCDACNDSPATILCSTESSVFCQNCDWERHNLSLSLVHDRRPLEGFTGCPSVSELLSILGFEDLGKKALFSTEDSGVCDVGSGDGFVGSELEEGLSDLFVWDAPAVVSLDDLISSTSSSHNYQAMEVPPLPKNRKAACGQHKEEIISQLRELAKSEPIPEQYLKSASLSTGFEHEFEADIFPSYERIIHMQTNVLEGHRDSETANQVVPPNTSLYKEEALDFHSVSTVCGNHTYLSSGGQLNSFNSENSSTTPKVASYELTSQERDSALLRYKEKKRTRRYDRHIRYESRKVRAESRTRIKGRFAKIEH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1864g00001 373 ProSiteProfiles CCT domain profile. 329 371 IPR010402 GO:0005515
Pral1864g00001 373 ProSiteProfiles Zinc finger B-box type profile. 61 107 IPR000315 GO:0008270
Pral1864g00001 373 MobiDBLite consensus disorder prediction 1 20 - -
Pral1864g00001 373 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Pral1864g00001 373 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 370 - -
Pral1864g00001 373 Pfam CCT motif 329 370 IPR010402 GO:0005515
Pral1864g00001 373 Pfam B-box zinc finger 64 106 IPR000315 GO:0008270
Pral1864g00001 373 Pfam B-box zinc finger 20 62 IPR000315 GO:0008270
Pral1864g00001 373 CDD Bbox1_BBX-like 22 65 - -
Pral1864g00001 373 SMART bboxneu5 66 107 IPR000315 GO:0008270
Pral1864g00001 373 SMART bboxneu5 18 65 IPR000315 GO:0008270
Pral1864g00001 373 Coils Coil 371 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1864g00001 Pral-Chr1864 1958 3989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1864g00001 21 344 C2C2-CO-like Transcription Factor Family AT2G47890 42.727 2.19e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral1864g00001 CCT 2.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1864g00001 - - pcin:129296118 594.349