LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1844g00044	ATGGCTGGGAAAGAAGAAAACCGTATTTTTGTGGGAGGCTTGTCTTGGGACGTAACGGAGCGTCAGCTTGAGCACGCCTTTAGTCGTTGCGGCAAAGTTATTGAATGCCAGATCATGTTGGAAAGGGACACAGGTCGTCCACGTGGATTTGGGTTTATCACATTTGCAGATCGTAGAGGAATGGAGGATGCAATCAAGGAAATGCACGGACGGGAGCTTGGTGACCGCATTATCTCTGTCAACAGGGCCCAGCCCAAAATGGGGTCAGATGATCTAGACCATGATTACTCATCAGGTGGCAGAGGAAGTTACGGGGTGGGAGGCAGGGTAGGACAGGATGACTGCTTCAAATGTGGGCGACCTGGCCATTGGGCTCGAGATTGTCCTTTGGCAGGAGGAGGTCGTGGTGGGGGTGGGGGTTCATATTCTTCCCGTCCTAGGTTTGGAAGTGGTGGTGGCCATGGGGATCGCCTCGGAGAACGTGATCGATTTATTGATGATCGTTATGGTGGAGGACGTTTTGGAGATAGGGAACGCTTTGACAGCCGGGATAACAAATATGGGGATACTAAATATGGCGACCGTGATCACTACTACAGTGACAGGTACCGGCCTAGTGGAGATCGGTTTGCAAATGATTCCTATGGTGGTTCAGACCGTTACCCACAAAATAGTTATGGGAAAGATAGAGCCTATGACAGGTATCCCAGTGCAAGAAATAACGATAGGTTCGGAAGTGGAGCGCCAGCACGAGACCAAGGCAGGAGTTTTAGGGGTGGCCGACGTGGTGGTCCTTATGACCGTCCAAGCGGCAGGGGTGGCCGCCCATCTTCATTCAACCGTTACTGA	849	0.5171	MAGKEENRIFVGGLSWDVTERQLEHAFSRCGKVIECQIMLERDTGRPRGFGFITFADRRGMEDAIKEMHGRELGDRIISVNRAQPKMGSDDLDHDYSSGGRGSYGVGGRVGQDDCFKCGRPGHWARDCPLAGGGRGGGGGSYSSRPRFGSGGGHGDRLGERDRFIDDRYGGGRFGDRERFDSRDNKYGDTKYGDRDHYYSDRYRPSGDRFANDSYGGSDRYPQNSYGKDRAYDRYPSARNNDRFGSGAPARDQGRSFRGGRRGGPYDRPSGRGGRPSSFNRY	282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1844g00044	282	Gene3D	-	1	110	IPR012677	-
	Pral1844g00044	282	SUPERFAMILY	Retrovirus zinc finger-like domains	100	134	IPR036875	GO:0003676\|GO:0008270
	Pral1844g00044	282	FunFam	glycine-rich RNA-binding protein RZ1C	1	112	-	-
	Pral1844g00044	282	MobiDBLite	consensus disorder prediction	85	104	-	-
	Pral1844g00044	282	MobiDBLite	consensus disorder prediction	154	208	-	-
	Pral1844g00044	282	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Pral1844g00044	282	ProSiteProfiles	Zinc finger CCHC-type profile.	115	129	IPR001878	GO:0003676\|GO:0008270
	Pral1844g00044	282	MobiDBLite	consensus disorder prediction	134	282	-	-
	Pral1844g00044	282	Pfam	Zinc knuckle	115	129	IPR001878	GO:0003676\|GO:0008270
	Pral1844g00044	282	SMART	c2hcfinal6	114	130	IPR001878	GO:0003676\|GO:0008270
	Pral1844g00044	282	PANTHER	SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL	4	273	-	-
	Pral1844g00044	282	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Pral1844g00044	282	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	78	IPR000504	GO:0003723
	Pral1844g00044	282	Gene3D	-	111	137	-	-
	Pral1844g00044	282	SUPERFAMILY	RNA-binding domain, RBD	4	108	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1844g00044	Pral-Chr1844	349034	354495	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1844g00044	9	88	C2H2 Transcription Factor Family	AT2G19380	40.000	4.94e-13	67.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1844g00044	-		-	gmx:100809519	339.732