Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1844g00029 ATGCCAGGAACTGAAGTTGCAGTTGCCCCAAAAAGACGTAAAAGGTTTTCAGATTCACTTGCGGACTTGCATCCAGATTCCTATAATAGACAACACACTTCAAAGATGCTGCTTCGCATACAGGATCCAGACCAGTTGTGTCGCACTAGTGCTTGTGTCAAAGGAGTTGATCTTCATATGGAGCTTACTTCTGCTGCTTTTGTTCACCCAGAAACAAGCAAACGGTTGTCACTCAATAATAGGCTTCAGTTGGTCTACGTAGTTCCAAGAATAGCTAACAAGAAGGCCAATGGTGCTTCCAAAATGAACATTATGAAAACGAAAGGCAGTTCAGCTACTAGGGAAGCTGACTCTGGAAATTTAACTGATGATAAAGGATGTAGGCAAGCAATTGTTTATCTTCTGCTTTCAGAGTCAGTGGCCAAGGGACATGTGATGGTTTCTAAATCTCTTCGACGGTATTTAGGAGCTGGTCTGCATTCATGGGTCTATTTGAAGGCATGTGATGTTAATTTGGAAAAAGCTATTCCCTCCTTCTCTCTTTCTCCTTGCCACTTCCGAATGTTAAGGCAAGACAATGATGGTGATAATCATATGGATAAAAACAAGCTCACAAGGACTGCATCAGGTGTCTTTGGAGATCTTGTGGATTGGTCTATCCATAATGAAGTTATTAACGTTCTTTCAGATGAATCCCATTCTCAAGCAGATGAAGATGTTGCAAATCAGTCGGAGAATCTAAATGGACTACAGCATCTTCTAAGACTATGGTATAGTGCACAACTTGATGCGGTTGCTTCCTTTACTGGTATGGAGGTTAAAGCACCAGTATTGGGTAGTAAAACCTTACTTCATTTTGAAGTCAGTTACATAAAGCTTGGGATTAATGGAAAGGTTCAGTTGGCTTCTAATTCATCAGAAAACAGAAACAAGACAGCTGAACTATTGTTTTTACTAACTATTGGTGAAGATTCCTTGCATCACGGAAAAATCACTGCATATGAAATTGCACTTGGTGAAAGAGACAAAATGAACAGAAATCCAGCAGATCAACAGCTGTTTAAAAGGCTAAAGTTCACTGATCCCGTGTCTATTCAATCTCTAGAAGATAAAATATCTGAAGAACATATTAATTCAGAAGTAACAAGCCTTGACTTGATGGGGGCAACTGCTTCTGATGTTATCAATAGGGTGACAGTATTGTTATCTTCTGCTTCTGGTATGTGGTTTGATTCATATGACTTGCCGCTCCCCGGACATATTCTTATATATGGACCTTCAGGCTCTGGCAAAACTTCACTAGCAAGGACTGTTGCAAAGTACTTTGAGAAACATGGAGACATCTTAGCACACATAATTTTTGTTTCTTGTTCAAAATTAGCTTTGGAGAATGTCCCAACAATCCGGAAAGAAGTTACTAACAACGTTATGGAAGCTTTAGATCATGCACCTTCTATTGTCATCTTTGATGATCTTGATAGCATGATTTCCACCTCTGAGTCGGAAGGGCCTCAACTTTCAATGTCTGCTGCTGGACTCGCAAGTTTTCTGACTGACATTATTGATGAATATGGGGAGAGAAGGCGAAAATCATGTGGGTTTGGACCAATAGCCTTCATAGCTTCTGTACAAGCTCTTGAGAAGATACCACAATCTTTAAGCTCTTCAGGGAGATTTGACTTTCACATACAGCTGCCAGCTCCTGCAGCTTCAGAGCGGGAGGCTATGTTGAGGCATGAAATAAAAAGGCGTCACTTGCAATGTGCTGATGACATCCTGCTTGACGTAGCTGTCAAATGTGATGGCTATGATGGTTATGATCTGGAAATATTGGTTGATAGAGCTGTCCATGCTGCTGTTTCCCGCTTTCTCCCATCAAATGCTGCTCTTAATGAGCATGAGAGCCCTGCTTTACTTATGGAAGATTTCTCTCAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGAGACATTACAAAAGCTTCTTCTGATGGTGGACGCTCTGGCTGGGATGATGTGGGAGGCCTTGATGACATTCAAAACACCATTAAGGAGATGATAGAGTTGCCTTCTAAGTTTCCAAGAACTTTTGCGCAAGCTCCTTTGAGGTTAAGATCAAACGTCCTTTTATATGGACCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCAGCTGCTGCTGCTTGTTCTCTACGTTTCATATCTGTGAAAGGGCCAGAACTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCGGCAGCACCATGTCTACTCTTTTTTGATGAATTCGATTCGATTGCCCCCAAGAGAGGACATGACAATACTGGAGTCACTGATCGTGTTGTGAATCAATTTCTGACCGAGTTAGATGGTGTTGAGATTTTAACAGGGGTATTTGTTTTTGCTGCTACCAGTAGACCGGATTTGCTTGATGCGGCACTTTTAAGACCAGGCAGGTTAGATCGACTTCTGTTCTGTGACTTTCCATCTCAGCAGGAAAGGCTTGAAATTCTTACCGTACTTTCCAGAAAGTTGCCCCTGGCCAGTGATGTGGATTTGGCTGCTGTAGCTCATATGACCGAGGGATTTAGTGGAGCTGATCTCCAAGCTCTCCTTTCAGACGCCCAACTTGCAGCAGTTCATGAAGTCTTGGATGATGCGAACACCTCTGGGCCTGAGAGAAGACCGGTTATTACAGACACTCTTCTCAAGGTTATAGCCTCCAGGGCTAGACCATCTGTTTCAGATGAGGAGAAAAGAAGACTTTACAGGATTTACAGCCAGTTCCTAGATTCAAAGAGATCTGTTGCTGCTCAGTCAAGAGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 2886 0.4231 MPGTEVAVAPKRRKRFSDSLADLHPDSYNRQHTSKMLLRIQDPDQLCRTSACVKGVDLHMELTSAAFVHPETSKRLSLNNRLQLVYVVPRIANKKANGASKMNIMKTKGSSATREADSGNLTDDKGCRQAIVYLLLSESVAKGHVMVSKSLRRYLGAGLHSWVYLKACDVNLEKAIPSFSLSPCHFRMLRQDNDGDNHMDKNKLTRTASGVFGDLVDWSIHNEVINVLSDESHSQADEDVANQSENLNGLQHLLRLWYSAQLDAVASFTGMEVKAPVLGSKTLLHFEVSYIKLGINGKVQLASNSSENRNKTAELLFLLTIGEDSLHHGKITAYEIALGERDKMNRNPADQQLFKRLKFTDPVSIQSLEDKISEEHINSEVTSLDLMGATASDVINRVTVLLSSASGMWFDSYDLPLPGHILIYGPSGSGKTSLARTVAKYFEKHGDILAHIIFVSCSKLALENVPTIRKEVTNNVMEALDHAPSIVIFDDLDSMISTSESEGPQLSMSAAGLASFLTDIIDEYGERRRKSCGFGPIAFIASVQALEKIPQSLSSSGRFDFHIQLPAPAASEREAMLRHEIKRRHLQCADDILLDVAVKCDGYDGYDLEILVDRAVHAAVSRFLPSNAALNEHESPALLMEDFSQAMHDFLPVAMRDITKASSDGGRSGWDDVGGLDDIQNTIKEMIELPSKFPRTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSQQERLEILTVLSRKLPLASDVDLAAVAHMTEGFSGADLQALLSDAQLAAVHEVLDDANTSGPERRPVITDTLLKVIASRARPSVSDEEKRRLYRIYSQFLDSKRSVAAQSRDAKGKRATLA 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1844g00029 961 Gene3D - 569 648 - -
Pral1844g00029 961 Pfam AAA+ lid domain 860 895 IPR041569 -
Pral1844g00029 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 648 IPR027417 -
Pral1844g00029 961 Gene3D - 839 940 - -
Pral1844g00029 961 FunFam Nuclear valosin-containing protein-like 666 845 - -
Pral1844g00029 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 928 IPR027417 -
Pral1844g00029 961 ProSitePatterns AAA-protein family signature. 808 826 IPR003960 GO:0005524|GO:0016887
Pral1844g00029 961 Gene3D - 371 568 IPR027417 -
Pral1844g00029 961 FunFam PeRoXisome assembly factor 839 915 - -
Pral1844g00029 961 Gene3D - 666 837 IPR027417 -
Pral1844g00029 961 Pfam ATPase family associated with various cellular activities (AAA) 708 835 IPR003959 GO:0005524|GO:0016887
Pral1844g00029 961 Pfam ATPase family associated with various cellular activities (AAA) 421 566 IPR003959 GO:0005524|GO:0016887
Pral1844g00029 961 CDD RecA-like_PEX1_r2 679 836 - -
Pral1844g00029 961 SMART AAA_5 704 840 IPR003593 GO:0016887
Pral1844g00029 961 SMART AAA_5 417 569 IPR003593 GO:0016887
Pral1844g00029 961 FunFam Peroxisome biogenesis protein 1 569 649 - -
Pral1844g00029 961 FunFam Peroxisome biogenesis protein 1 374 568 - -
Pral1844g00029 961 PANTHER AAA-FAMILY ATPASE 69 934 - -
Pral1844g00029 961 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1844g00029 Pral-Chr1844 230427 246455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1844g00029 702 900 Calmodulin-binding Proteins AT3G56690 39.000 1.73e-37 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1844g00029 K13338 - gmx:100803882 1379.39