Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1844g00028 ATGGTGGACAATTCACTGGTGATGACAACTGAAGTCTTAGAATGCATTTCCTTGCCAGATCATGCTAGAGTTCAAGTAAAAGCTGCTTCTAACGTGCCACACGCTTCTCTGATTACAATAGAACCCCATACAGAAGACGACTGGGAAATTTTGGAGCTGAACTCTGAGCAAGCTGAGGCAGCAATTTTAAACCAGGTAAGGATTGTCCATGAAGGAATGAGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACGTTCTTTGTTGCTTCTGTTATTCCCAAGAAAGCGGTGGTGCAACTCATGCCAGGAACTGAAGTTGCAGTTGCCCCAAAAAGACGTAAAAGGTTTTCAGATTCACTTGCGGACTTGCATCCAGATTCCTATAATAGACAACACACTTCAAAGATGCTGCTTCGCATACAGGATCCAGACCAGTTGTGTCGCACTAGTGCTTGTGTCAAAGGAGTTGATCTTCATATGGAGCTTACTTCTGCTGCTTTTGTTCACCCAGAAACAAGCAAACGGTTGTCACTCAATAATAGGCTTCAGTTGGTCTACGTAGTTCCAAGAATAGCTAACAAGAAGGCCAATGGTGCTTCCAAAATGAACATTATGAAAACGAAAGGCAGTTCAGCTACTAGGGAAGCTGACTCTGGAAATTTAACTGATGATAAAGGATGTAGGCAAGCAATTGTTTATCTTCTGCTTTCAGAGTCAGTGGCCAAGGGACATGTGATGGTTTCTAAATCTCTTCGACGGTATTTAGGAGCTGGTCTGCATTCATGGGTCTATTTGAAGGCATGTGATGTTAATTTGGAAAAAGCTATTCCCTCCTTCTCTCTTTCTCCTTGCCACTTCCGAATGTTAAGGCAAGACAATGATGGTGATAATCATATGGATAAAAACAAGCTCACAAGGACTGCATCAGGTGTCTTTGGAGATCTTGTGGATTGGTCTATCCATAATGAAGTTATTAACGTTCTTTCAGATGAATCCCATTCTCAAGCAGATGAAGATGTTGCAAATCAGTCGGAGAATCTAAATGGACTACAGCATCTTCTAAGACTATGGTATAGTGCACAACTTGATGCGGTTGCTTCCTTTACTGGTATGGAGGTTAAAGCACCAGTATTGGGTAGTAAAACCTTACTTCATTTTGAAGTCAGTTACATAAAGCTTGGGATTAATGGAAAGGTTCAGTTGGCTTCTAATTCATCAGAAAACAGAAACAAGACAGCTGAACTATTGTTTTTACTAACTATTGGTGAAGATTCCTTGCATCACGGAAAAATCACTGCATATGAAATTGCACTTGGTGAAAGAGACAAAATGAACAGAAATCCAGCAGATCAACAGCTGTTTAAAAGGCTAAAGTTCACTGATCCCGTGTCTATTCAATCTCTAGAAGATAAAATATCTGAAGAACATATTAATTCAGAAGTAACAAGCCTTGACTTGATGGGGGCAACTGCTTCTGATGTTATCAATAGGGTGACAGTATTGTTATCTTCTGCTTCTGGTATGTGGTTTGATTCATATGACTTGCCGCTCCCCGGACATATTCTTATATATGGACCTTCAGGCTCTGGCAAAACTTCACTAGCAAGGACTGTTGCAAAGTACTTTGAGAAACATGGAGACATCTTAGCACACATAATTTTTGTTTCTTGTTCAAAATTAGCTTTGGAGAATGTCCCAACAATCCGGAAAGAAGTTACTAACAACGTTATGGAAGCTTTAGATCATGCACCTTCTATTGTCATCTTTGATGATCTTGATAGCATGATTTCCACCTCTGAGTCGGAAGGGCCTCAACTTTCAATGTCTGCTGCTGGACTCGCAAGTTTTCTGACTGACATTATTGATGAATATGGGGAGAGAAGGCGAAAATCATGTGGGTTTGGACCAATAGCCTTCATAGCTTCTGTACAAGCTCTTGAGAAGATACCACAATCTTTAAGCTCTTCAGGGAGATTTGACTTTCACATACAGCTGCCAGCTCCTGCAGCTTCAGAGCGGGAGGCTATGTTGAGGCATGAAATAAAAAGGCGTCACTTGCAATGTGCTGATGACATCCTGCTTGACGTAGCTGTCAAATGTGATGGCTATGATGGTTATGATCTGGAAATATTGGTTGATAGAGCTGTCCATGCTGCTGTTTCCCGCTTTCTCCCATCAAATGCTGCTCTTAATGAGCATGAGAGCCCTGCTTTACTTATGGAAGATTTCTCTCAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGAGACATTACAAAAGCTTCTTCTGATGGTGGACGCTCTGGCTGGGATGATGTGGGAGGCCTTGATGACATTCAAAACACCATTAAGGAGATGATAGAGTTGCCTTCTAAGTTTCCAAGAACTTTTGCGCAAGCTCCTTTGAGGTTAAGATCAAACGTCCTTTTATATGGACCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCAGCTGCTGCTGCTTGTTCTCTACGTTTCATATCTGTGAAAGGGCCAGAACTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCGGCAGCACCATGTCTACTCTTTTTTGATGAATTCGATTCGATTGCCCCCAAGAGAGGACATGACAATACTGGAGTCACTGATCGTGTTGTGAATCAATTTCTGACCGAGTTAGATGGTGTTGAGATTTTAACAGGGGTATTTGTTTTTGCTGCTACCAGTAGACCGGATTTGCTTGATGCGGCACTTTTAAGACCAGGCAGGTTAGATCGACTTCTGTTCTGTGACTTTCCATCTCAGCAGGAAAGGCTTGAAATTCTTACCGTACTTTCCAGAAAGTTGCCCCTGGCCAGTGATGTGGATTTGGCTGCTGTAGCTCATATGACCGAGGGATTTAGTGGAGCTGATCTCCAAGCTCTCCTTTCAGACGCCCAACTTGCAGCAGTTCATGAAGTCTTGGATGATGCGAACACCTCTGGGCCTGAGAGAAGACCGGTTATTACAGACACTCTTCTCAAGGTTATAGCCTCCAGGGCTAGACCATCTGTTTCAGATGAGGAGAAAAGAAGACTTTACAGGATTTACAGCCAGTTCCTAGATTCAAAGAGATCTGTTGCTGCTCAGTCAAGAGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3189 0.424 MVDNSLVMTTEVLECISLPDHARVQVKAASNVPHASLITIEPHTEDDWEILELNSEQAEAAILNQVRIVHEGMRFPLWLHGHTMITFFVASVIPKKAVVQLMPGTEVAVAPKRRKRFSDSLADLHPDSYNRQHTSKMLLRIQDPDQLCRTSACVKGVDLHMELTSAAFVHPETSKRLSLNNRLQLVYVVPRIANKKANGASKMNIMKTKGSSATREADSGNLTDDKGCRQAIVYLLLSESVAKGHVMVSKSLRRYLGAGLHSWVYLKACDVNLEKAIPSFSLSPCHFRMLRQDNDGDNHMDKNKLTRTASGVFGDLVDWSIHNEVINVLSDESHSQADEDVANQSENLNGLQHLLRLWYSAQLDAVASFTGMEVKAPVLGSKTLLHFEVSYIKLGINGKVQLASNSSENRNKTAELLFLLTIGEDSLHHGKITAYEIALGERDKMNRNPADQQLFKRLKFTDPVSIQSLEDKISEEHINSEVTSLDLMGATASDVINRVTVLLSSASGMWFDSYDLPLPGHILIYGPSGSGKTSLARTVAKYFEKHGDILAHIIFVSCSKLALENVPTIRKEVTNNVMEALDHAPSIVIFDDLDSMISTSESEGPQLSMSAAGLASFLTDIIDEYGERRRKSCGFGPIAFIASVQALEKIPQSLSSSGRFDFHIQLPAPAASEREAMLRHEIKRRHLQCADDILLDVAVKCDGYDGYDLEILVDRAVHAAVSRFLPSNAALNEHESPALLMEDFSQAMHDFLPVAMRDITKASSDGGRSGWDDVGGLDDIQNTIKEMIELPSKFPRTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSQQERLEILTVLSRKLPLASDVDLAAVAHMTEGFSGADLQALLSDAQLAAVHEVLDDANTSGPERRPVITDTLLKVIASRARPSVSDEEKRRLYRIYSQFLDSKRSVAAQSRDAKGKRATLA 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1844g00028 1062 Pfam ATPase family associated with various cellular activities (AAA) 809 936 IPR003959 GO:0005524|GO:0016887
Pral1844g00028 1062 Pfam ATPase family associated with various cellular activities (AAA) 522 667 IPR003959 GO:0005524|GO:0016887
Pral1844g00028 1062 Gene3D - 33 112 - -
Pral1844g00028 1062 Pfam Peroxisome biogenesis factor 1, N-terminal 38 111 IPR015342 GO:0005524|GO:0005777|GO:0007031
Pral1844g00028 1062 SUPERFAMILY Cdc48 domain 2-like 33 111 IPR029067 -
Pral1844g00028 1062 Gene3D - 472 669 IPR027417 -
Pral1844g00028 1062 CDD RecA-like_PEX1_r2 780 937 - -
Pral1844g00028 1062 ProSitePatterns AAA-protein family signature. 909 927 IPR003960 GO:0005524|GO:0016887
Pral1844g00028 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 749 IPR027417 -
Pral1844g00028 1062 Gene3D - 940 1041 - -
Pral1844g00028 1062 FunFam Peroxisome biogenesis protein 1 670 750 - -
Pral1844g00028 1062 FunFam Peroxisome biogenesis factor 1 33 112 - -
Pral1844g00028 1062 FunFam PeRoXisome assembly factor 940 1016 - -
Pral1844g00028 1062 PANTHER AAA-FAMILY ATPASE 170 1035 - -
Pral1844g00028 1062 Gene3D - 767 938 IPR027417 -
Pral1844g00028 1062 SMART AAA_5 805 941 IPR003593 GO:0016887
Pral1844g00028 1062 SMART AAA_5 518 670 IPR003593 GO:0016887
Pral1844g00028 1062 FunFam Nuclear valosin-containing protein-like 767 946 - -
Pral1844g00028 1062 Gene3D - 670 749 - -
Pral1844g00028 1062 Pfam AAA+ lid domain 961 996 IPR041569 -
Pral1844g00028 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 1029 IPR027417 -
Pral1844g00028 1062 FunFam Peroxisome biogenesis protein 1 475 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1844g00028 Pral-Chr1844 230427 247157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1844g00028 741 996 Calmodulin-binding Proteins AT3G56690 44.574 5.17e-64 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1844g00028 K13338 - gmx:100803882 1531.92