Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1844g00027 ATGAGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACGTTCTTTGTTGCTTCTGTTATTCCCAAGAAAGCGGTGGTGCAACTCATGCCAGGAACTGAAGTTGCAGTTGCCCCAAAAAGACGTAAAAGGTTTTCAGATTCACTTGCGGACTTGCATCCAGATTCCTATAATAGACAACACACTTCAAAGATGCTGCTTCGCATACAGGATCCAGACCAGTTGTGTCGCACTAGTGCTTGTGTCAAAGGAGTTGATCTTCATATGGAGCTTACTTCTGCTGCTTTTGTTCACCCAGAAACAAGCAAACGGTTGTCACTCAATAATAGGCTTCAGTTGGTCTACGTAGTTCCAAGAATAGCTAACAAGAAGGCCAATGGTGCTTCCAAAATGAACATTATGAAAACGAAAGGCAGTTCAGCTACTAGGGAAGCTGACTCTGGAAATTTAACTGATGATAAAGGATGTAGGCAAGCAATTGTTTATCTTCTGCTTTCAGAGTCAGTGGCCAAGGGACATGTGATGGTTTCTAAATCTCTTCGACGGTATTTAGGAGCTGGTCTGCATTCATGGGTCTATTTGAAGGCATGTGATGTTAATTTGGAAAAAGCTATTCCCTCCTTCTCTCTTTCTCCTTGCCACTTCCGAATGTTAAGGCAAGACAATGATGGTGATAATCATATGGATAAAAACAAGCTCACAAGGACTGCATCAGGTGTCTTTGGAGATCTTGTGGATTGGTCTATCCATAATGAAGTTATTAACGTTCTTTCAGATGAATCCCATTCTCAAGCAGATGAAGATGTTGCAAATCAGTCGGAGAATCTAAATGGACTACAGCATCTTCTAAGACTATGGTATAGTGCACAACTTGATGCGGTTGCTTCCTTTACTGGTATGGAGGTTAAAGCACCAGTATTGGGTAGTAAAACCTTACTTCATTTTGAAGTCAGTTACATAAAGCTTGGGATTAATGGAAAGGTTCAGTTGGCTTCTAATTCATCAGAAAACAGAAACAAGACAGCTGAACTATTGTTTTTACTAACTATTGGTGAAGATTCCTTGCATCACGGAAAAATCACTGCATATGAAATTGCACTTGGTGAAAGAGACAAAATGAACAGAAATCCAGCAGATCAACAGCTGTTTAAAAGGCTAAAGTTCACTGATCCCGTGTCTATTCAATCTCTAGAAGATAAAATATCTGAAGAACATATTAATTCAGAAGTAACAAGCCTTGACTTGATGGGGGCAACTGCTTCTGATGTTATCAATAGGGTGACAGTATTGTTATCTTCTGCTTCTGGTATGTGGTTTGATTCATATGACTTGCCGCTCCCCGGACATATTCTTATATATGGACCTTCAGGCTCTGGCAAAACTTCACTAGCAAGGACTGTTGCAAAGTACTTTGAGAAACATGGAGACATCTTAGCACACATAATTTTTGTTTCTTGTTCAAAATTAGCTTTGGAGAATGTCCCAACAATCCGGAAAGAAGTTACTAACAACGTTATGGAAGCTTTAGATCATGCACCTTCTATTGTCATCTTTGATGATCTTGATAGCATGATTTCCACCTCTGAGTCGGAAGGGCCTCAACTTTCAATGTCTGCTGCTGGACTCGCAAGTTTTCTGACTGACATTATTGATGAATATGGGGAGAGAAGGCGAAAATCATGTGGGTTTGGACCAATAGCCTTCATAGCTTCTGTACAAGCTCTTGAGAAGATACCACAATCTTTAAGCTCTTCAGGGAGATTTGACTTTCACATACAGCTGCCAGCTCCTGCAGCTTCAGAGCGGGAGGCTATGTTGAGGCATGAAATAAAAAGGCGTCACTTGCAATGTGCTGATGACATCCTGCTTGACGTAGCTGTCAAATGTGATGGCTATGATGGTTATGATCTGGAAATATTGGTTGATAGAGCTGTCCATGCTGCTGTTTCCCGCTTTCTCCCATCAAATGCTGCTCTTAATGAGCATGAGAGCCCTGCTTTACTTATGGAAGATTTCTCTCAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGAGACATTACAAAAGCTTCTTCTGATGGTGGACGCTCTGGCTGGGATGATGTGGGAGGCCTTGATGACATTCAAAACACCATTAAGGAGATGATAGAGTTGCCTTCTAAGTTTCCAAGAACTTTTGCGCAAGCTCCTTTGAGGTTAAGATCAAACGTCCTTTTATATGGACCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCAGCTGCTGCTGCTTGTTCTCTACGTTTCATATCTGTGAAAGGGCCAGAACTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCGGCAGCACCATGTCTACTCTTTTTTGATGAATTCGATTCGATTGCCCCCAAGAGAGGACATGACAATACTGGAGTCACTGATCGTGTTGTGAATCAATTTCTGACCGAGTTAGATGGTGTTGAGATTTTAACAGGGGTATTTGTTTTTGCTGCTACCAGTAGACCGGATTTGCTTGATGCGGCACTTTTAAGACCAGGCAGGTTAGATCGACTTCTGTTCTGTGACTTTCCATCTCAGCAGGAAAGGCTTGAAATTCTTACCGTACTTTCCAGAAAGTTGCCCCTGGCCAGTGATGTGGATTTGGCTGCTGTAGCTCATATGACCGAGGGATTTAGTGGAGCTGATCTCCAAGCTCTCCTTTCAGACGCCCAACTTGCAGCAGTTCATGAAGTCTTGGATGATGCGAACACCTCTGGGCCTGAGAGAAGACCGGTTATTACAGACACTCTTCTCAAGGTTATAGCCTCCAGGGCTAGACCATCTGTTTCAGATGAGGAGAAAAGAAGACTTTACAGGATTTACAGCCAGTTCCTAGATTCAAAGAGATCTGTTGCTGCTCAGTCAAGAGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 2973 0.4231 MRFPLWLHGHTMITFFVASVIPKKAVVQLMPGTEVAVAPKRRKRFSDSLADLHPDSYNRQHTSKMLLRIQDPDQLCRTSACVKGVDLHMELTSAAFVHPETSKRLSLNNRLQLVYVVPRIANKKANGASKMNIMKTKGSSATREADSGNLTDDKGCRQAIVYLLLSESVAKGHVMVSKSLRRYLGAGLHSWVYLKACDVNLEKAIPSFSLSPCHFRMLRQDNDGDNHMDKNKLTRTASGVFGDLVDWSIHNEVINVLSDESHSQADEDVANQSENLNGLQHLLRLWYSAQLDAVASFTGMEVKAPVLGSKTLLHFEVSYIKLGINGKVQLASNSSENRNKTAELLFLLTIGEDSLHHGKITAYEIALGERDKMNRNPADQQLFKRLKFTDPVSIQSLEDKISEEHINSEVTSLDLMGATASDVINRVTVLLSSASGMWFDSYDLPLPGHILIYGPSGSGKTSLARTVAKYFEKHGDILAHIIFVSCSKLALENVPTIRKEVTNNVMEALDHAPSIVIFDDLDSMISTSESEGPQLSMSAAGLASFLTDIIDEYGERRRKSCGFGPIAFIASVQALEKIPQSLSSSGRFDFHIQLPAPAASEREAMLRHEIKRRHLQCADDILLDVAVKCDGYDGYDLEILVDRAVHAAVSRFLPSNAALNEHESPALLMEDFSQAMHDFLPVAMRDITKASSDGGRSGWDDVGGLDDIQNTIKEMIELPSKFPRTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSQQERLEILTVLSRKLPLASDVDLAAVAHMTEGFSGADLQALLSDAQLAAVHEVLDDANTSGPERRPVITDTLLKVIASRARPSVSDEEKRRLYRIYSQFLDSKRSVAAQSRDAKGKRATLA 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1844g00027 990 SMART AAA_5 446 598 IPR003593 GO:0016887
Pral1844g00027 990 SMART AAA_5 733 869 IPR003593 GO:0016887
Pral1844g00027 990 FunFam Nuclear valosin-containing protein-like 695 874 - -
Pral1844g00027 990 FunFam Peroxisome biogenesis protein 1 598 678 - -
Pral1844g00027 990 Gene3D - 695 866 IPR027417 -
Pral1844g00027 990 Pfam ATPase family associated with various cellular activities (AAA) 450 595 IPR003959 GO:0005524|GO:0016887
Pral1844g00027 990 Pfam ATPase family associated with various cellular activities (AAA) 737 864 IPR003959 GO:0005524|GO:0016887
Pral1844g00027 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 429 677 IPR027417 -
Pral1844g00027 990 Gene3D - 598 677 - -
Pral1844g00027 990 CDD RecA-like_PEX1_r2 708 865 - -
Pral1844g00027 990 Pfam AAA+ lid domain 889 924 IPR041569 -
Pral1844g00027 990 FunFam PeRoXisome assembly factor 868 944 - -
Pral1844g00027 990 FunFam Peroxisome biogenesis protein 1 403 597 - -
Pral1844g00027 990 Gene3D - 1 40 - -
Pral1844g00027 990 Gene3D - 400 597 IPR027417 -
Pral1844g00027 990 ProSitePatterns AAA-protein family signature. 837 855 IPR003960 GO:0005524|GO:0016887
Pral1844g00027 990 PANTHER AAA-FAMILY ATPASE 98 963 - -
Pral1844g00027 990 Gene3D - 868 969 - -
Pral1844g00027 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 957 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1844g00027 Pral-Chr1844 230427 247349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1844g00027 731 929 Calmodulin-binding Proteins AT3G56690 39.000 1.82e-37 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1844g00027 K13338 - gmx:100803882 1428.31