Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1844g00026 ATGGAGTTGGAAGTGAAGTTGGTGGGGAACATAGACAACTGCTTCGTATCTCTTCCTCTTCCTCTTATCCAACTTCTGCATTCCACACGGTCGACGCCCCTCCCTCATATTCTCACCCTCGAGCTTCGCTCTCGCTCTGACGATCTCTGGTTCGTTGCTTGGTCCGGAGCCACTTCTACCTCTAATGCCATAGAGGTTGCGCAACATTTTGCAGAATGCATTTCCTTGCCAGATCATGCTAGAGTTCAAGTAAAAGCTGCTTCTAACGTGCCACACGCTTCTCTGATTACAATAGAACCCCATACAGAAGACGACTGGGAAATTTTGGAGCTGAACTCTGAGCAAGCTGAGGCAGCAATTTTAAACCAGGTAAGGATTGTCCATGAAGGAATGAGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACGTTCTTTGTTGCTTCTGTTATTCCCAAGAAAGCGGTGGTGCAACTCATGCCAGGAACTGAAGTTGCAGTTGCCCCAAAAAGACGTAAAAGGTTTTCAGATTCACTTGCGGACTTGCATCCAGATTCCTATAATAGACAACACACTTCAAAGATGCTGCTTCGCATACAGGATCCAGACCAGTTGTGTCGCACTAGTGCTTGTGTCAAAGGAGTTGATCTTCATATGGAGCTTACTTCTGCTGCTTTTGTTCACCCAGAAACAAGCAAACGGTTGTCACTCAATAATAGGCTTCAGTTGGTCTACGTAGTTCCAAGAATAGCTAACAAGAAGGCCAATGGTGCTTCCAAAATGAACATTATGAAAACGAAAGGCAGTTCAGCTACTAGGGAAGCTGACTCTGGAAATTTAACTGATGATAAAGGATGTAGGCAAGCAATTGTTTATCTTCTGCTTTCAGAGTCAGTGGCCAAGGGACATGTGATGGTTTCTAAATCTCTTCGACGGTATTTAGGAGCTGGTCTGCATTCATGGGTCTATTTGAAGGCATGTGATGTTAATTTGGAAAAAGCTATTCCCTCCTTCTCTCTTTCTCCTTGCCACTTCCGAATGTTAAGGCAAGACAATGATGGTGATAATCATATGGATAAAAACAAGCTCACAAGGACTGCATCAGGTGTCTTTGGAGATCTTGTGGATTGGTCTATCCATAATGAAGTTATTAACGTTCTTTCAGATGAATCCCATTCTCAAGCAGATGAAGATGTTGCAAATCAGTCGGAGAATCTAAATGGACTACAGCATCTTCTAAGACTATGGTATAGTGCACAACTTGATGCGGTTGCTTCCTTTACTGGTATGGAGGTTAAAGCACCAGTATTGGGTAGTAAAACCTTACTTCATTTTGAAGTCAGTTACATAAAGCTTGGGATTAATGGAAAGGTTCAGTTGGCTTCTAATTCATCAGAAAACAGAAACAAGACAGCTGAACTATTGTTTTTACTAACTATTGGTGAAGATTCCTTGCATCACGGAAAAATCACTGCATATGAAATTGCACTTGGTGAAAGAGACAAAATGAACAGAAATCCAGCAGATCAACAGCTGTTTAAAAGGCTAAAGTTCACTGATCCCGTGTCTATTCAATCTCTAGAAGATAAAATATCTGAAGAACATATTAATTCAGAAGTAACAAGCCTTGACTTGATGGGGGCAACTGCTTCTGATGTTATCAATAGGGTGACAGTATTGTTATCTTCTGCTTCTGGTATGTGGTTTGATTCATATGACTTGCCGCTCCCCGGACATATTCTTATATATGGACCTTCAGGCTCTGGCAAAACTTCACTAGCAAGGACTGTTGCAAAGTACTTTGAGAAACATGGAGACATCTTAGCACACATAATTTTTGTTTCTTGTTCAAAATTAGCTTTGGAGAATGTCCCAACAATCCGGAAAGAAGTTACTAACAACGTTATGGAAGCTTTAGATCATGCACCTTCTATTGTCATCTTTGATGATCTTGATAGCATGATTTCCACCTCTGAGTCGGAAGGGCCTCAACTTTCAATGTCTGCTGCTGGACTCGCAAGTTTTCTGACTGACATTATTGATGAATATGGGGAGAGAAGGCGAAAATCATGTGGGTTTGGACCAATAGCCTTCATAGCTTCTGTACAAGCTCTTGAGAAGATACCACAATCTTTAAGCTCTTCAGGGAGATTTGACTTTCACATACAGCTGCCAGCTCCTGCAGCTTCAGAGCGGGAGGCTATGTTGAGGCATGAAATAAAAAGGCGTCACTTGCAATGTGCTGATGACATCCTGCTTGACGTAGCTGTCAAATGTGATGGCTATGATGGTTATGATCTGGAAATATTGGTTGATAGAGCTGTCCATGCTGCTGTTTCCCGCTTTCTCCCATCAAATGCTGCTCTTAATGAGCATGAGAGCCCTGCTTTACTTATGGAAGATTTCTCTCAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGAGACATTACAAAAGCTTCTTCTGATGGTGGACGCTCTGGCTGGGATGATGTGGGAGGCCTTGATGACATTCAAAACACCATTAAGGAGATGATAGAGTTGCCTTCTAAGTTTCCAAGAACTTTTGCGCAAGCTCCTTTGAGGTTAAGATCAAACGTCCTTTTATATGGACCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCAGCTGCTGCTGCTTGTTCTCTACGTTTCATATCTGTGAAAGGGCCAGAACTGTTGAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTTTCTAAAGCAGCTGCGGCAGCACCATGTCTACTCTTTTTTGATGAATTCGATTCGATTGCCCCCAAGAGAGGACATGACAATACTGGAGTCACTGATCGTGTTGTGAATCAATTTCTGACCGAGTTAGATGGTGTTGAGATTTTAACAGGGGTATTTGTTTTTGCTGCTACCAGTAGACCGGATTTGCTTGATGCGGCACTTTTAAGACCAGGCAGGTTAGATCGACTTCTGTTCTGTGACTTTCCATCTCAGCAGGAAAGGCTTGAAATTCTTACCGTACTTTCCAGAAAGTTGCCCCTGGCCAGTGATGTGGATTTGGCTGCTGTAGCTCATATGACCGAGGGATTTAGTGGAGCTGATCTCCAAGCTCTCCTTTCAGACGCCCAACTTGCAGCAGTTCATGAAGTCTTGGATGATGCGAACACCTCTGGGCCTGAGAGAAGACCGGTTATTACAGACACTCTTCTCAAGGTTATAGCCTCCAGGGCTAGACCATCTGTTTCAGATGAGGAGAAAAGAAGACTTTACAGGATTTACAGCCAGTTCCTAGATTCAAAGAGATCTGTTGCTGCTCAGTCAAGAGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3363 0.4297 MELEVKLVGNIDNCFVSLPLPLIQLLHSTRSTPLPHILTLELRSRSDDLWFVAWSGATSTSNAIEVAQHFAECISLPDHARVQVKAASNVPHASLITIEPHTEDDWEILELNSEQAEAAILNQVRIVHEGMRFPLWLHGHTMITFFVASVIPKKAVVQLMPGTEVAVAPKRRKRFSDSLADLHPDSYNRQHTSKMLLRIQDPDQLCRTSACVKGVDLHMELTSAAFVHPETSKRLSLNNRLQLVYVVPRIANKKANGASKMNIMKTKGSSATREADSGNLTDDKGCRQAIVYLLLSESVAKGHVMVSKSLRRYLGAGLHSWVYLKACDVNLEKAIPSFSLSPCHFRMLRQDNDGDNHMDKNKLTRTASGVFGDLVDWSIHNEVINVLSDESHSQADEDVANQSENLNGLQHLLRLWYSAQLDAVASFTGMEVKAPVLGSKTLLHFEVSYIKLGINGKVQLASNSSENRNKTAELLFLLTIGEDSLHHGKITAYEIALGERDKMNRNPADQQLFKRLKFTDPVSIQSLEDKISEEHINSEVTSLDLMGATASDVINRVTVLLSSASGMWFDSYDLPLPGHILIYGPSGSGKTSLARTVAKYFEKHGDILAHIIFVSCSKLALENVPTIRKEVTNNVMEALDHAPSIVIFDDLDSMISTSESEGPQLSMSAAGLASFLTDIIDEYGERRRKSCGFGPIAFIASVQALEKIPQSLSSSGRFDFHIQLPAPAASEREAMLRHEIKRRHLQCADDILLDVAVKCDGYDGYDLEILVDRAVHAAVSRFLPSNAALNEHESPALLMEDFSQAMHDFLPVAMRDITKASSDGGRSGWDDVGGLDDIQNTIKEMIELPSKFPRTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSQQERLEILTVLSRKLPLASDVDLAAVAHMTEGFSGADLQALLSDAQLAAVHEVLDDANTSGPERRPVITDTLLKVIASRARPSVSDEEKRRLYRIYSQFLDSKRSVAAQSRDAKGKRATLA 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1844g00026 1120 Gene3D - 998 1099 - -
Pral1844g00026 1120 Pfam Peroxisome biogenesis factor 1, N-terminal 96 169 IPR015342 GO:0005524|GO:0005777|GO:0007031
Pral1844g00026 1120 Pfam AAA+ lid domain 1019 1054 IPR041569 -
Pral1844g00026 1120 CDD RecA-like_PEX1_r2 838 995 - -
Pral1844g00026 1120 Gene3D - 91 170 - -
Pral1844g00026 1120 Gene3D - 825 996 IPR027417 -
Pral1844g00026 1120 FunFam Peroxisome biogenesis protein 1 728 808 - -
Pral1844g00026 1120 SUPERFAMILY Cdc48 domain 2-like 91 169 IPR029067 -
Pral1844g00026 1120 SMART AAA_5 576 728 IPR003593 GO:0016887
Pral1844g00026 1120 SMART AAA_5 863 999 IPR003593 GO:0016887
Pral1844g00026 1120 PANTHER AAA-FAMILY ATPASE 228 1093 - -
Pral1844g00026 1120 Gene3D - 728 807 - -
Pral1844g00026 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 807 IPR027417 -
Pral1844g00026 1120 Pfam ATPase family associated with various cellular activities (AAA) 867 994 IPR003959 GO:0005524|GO:0016887
Pral1844g00026 1120 Pfam ATPase family associated with various cellular activities (AAA) 580 725 IPR003959 GO:0005524|GO:0016887
Pral1844g00026 1120 ProSitePatterns AAA-protein family signature. 967 985 IPR003960 GO:0005524|GO:0016887
Pral1844g00026 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 829 1087 IPR027417 -
Pral1844g00026 1120 FunFam Peroxisome biogenesis protein 1 533 727 - -
Pral1844g00026 1120 SUPERFAMILY ADC-like 10 86 IPR009010 -
Pral1844g00026 1120 FunFam PeRoXisome assembly factor 998 1074 - -
Pral1844g00026 1120 FunFam Nuclear valosin-containing protein-like 825 1004 - -
Pral1844g00026 1120 FunFam Peroxisome biogenesis factor 1 91 170 - -
Pral1844g00026 1120 Gene3D - 530 727 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1844g00026 Pral-Chr1844 230427 247545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1844g00026 577 783 Calmodulin-binding Proteins AT3G56690 31.731 5.60e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1844g00026 K13338 - gmx:100803882 1618.21