Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1844g00003 ATGGGTAATGTTGACATTCCCAATTGGCTAAAAGCCTTGCCATTGGCTCCGGAATTTCGCCCAACTGATACCGAATTCGCCGACCCAATTGCTTACATTTCAAAGATTGAGAAAGAAGCTAGCGCTTTTGGGATATGTAAGATCATTCCGCCATTACCCAAGCCTTCTAAAAAATATGTGCTCTCTAATTTAAACAAGTCTCTTTTGAAGAGCCCGGAATTGGCTTCAGATAGTAATTCAGTTGAAGTTAGTAATTCCTCGAAAATTACTTCTGGGGATAGTGGTAGTGATGGGGAGGCACGGGCTGTGTTTACCACAAGGCATCAGGAACTGGGGCAGAGTATTAAAAGAACCAAAGGAACAATTCAAAGCCCACTTTCAGGTGTTCATAAGCAAGTATGGCAGAGTGGGGAAACTTATACACTTGAACAGTTTGAGTCTAAATCAAAGGCTTTTGCAAGAAGTGTACTAGGCATGGTTAAGGAGGTTTCTCCTCTGGTTATAGAGGCTATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATATATGTGGAGTATGCCAATGATATGCCTGGGTCTGCTTTTGGGGAATCCAAGGGTCAATTTCGTTATATTCATAGAAGGCGAAGGAAAAAGGCTTATTATCAAAGGAGTCTAGATACCACAGATTGCCAAGAACCCAAAATTGATAAAATAAGAGATACCCGGACTAGCGAAAGTAAGGATGCTTCTGCCCATGGTCGTGAAGACTCATGCTTACAGACCTCAAATTCAACTTCAACTCCATCAACATTTTCATCAAATGAAGCCCTACATTCTATTAGGCAGAAGAGTTCAGATTCCAGCGACGAGATGGAAGGTAGTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTTATTGCACGTTCACAAGGCTCGCTAACTCGTTTCATGCCAGATGATATTCCTGGTGTTACTTCCCCCATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAAGATCATGAACTTCACAGCATGAATTTTCTTCACATTGGCTCATCAAAAACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAACTCATCCGCAATGAGGCTTATGGTGCCAATATTGATCACTTAGCTGCTCTGACTCTGTTGGGGGAGAAGACAACCCTTCTATCACCTGAGGTGGTTGTTGCATCTGGAATCCCTTGTTGCAGGTTGACGCAGAACCCTGGAGAATTTGTTGTGACCTTTCCAAGGGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTCACAGTGGCCAAGGAAGCTGCAGTGCGTAGGGCTGCAATGAATTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTTATTGACTATGTCTTTTGTTTCAAGAGTGCCAAGAACGTTATTACCGGGTGTGCGGAGTTCCCGTCTGCGAGACCGTCAAAGAGAAGAAAGAGAATTGTTAGTAAAAAGATCTTTTATAGAAGATATGCTGCAAGAAAACAATCTCCTATCTATTCTTCTTGGAAAGCAGTCAACTTATCATGCTGTTTTATGGAATGCTGATTTACTCCCTGATTCAAGCAAGGATTGTCCTCAGTTGCCTGACTCAACTTCTATGACTAGAACCTCTATGACGGACAATATGTCAAATTTGACTGCTATAGATAAGAGCAGTCACAGTTGTCTGTTAGATGAAATGAGCTTGTATATGGAGAATCTGACTGATTTTTATCTTGGCGAGGACAGTCTTCCATGTCACTTCCAAACTGATTCAGGAGCGTTGGCTTGTGTGGCTTGTGGAATTCTTGGTTTTCCGTTCATGACTGTGGTACAACCATCGGAGAGATCAGCAATGGAAATTTTGCCAGTCTCAGGGAATGCTCTTTCTGTTAGTGATCCACCTTCAACAAATGAACCATTGAAACTATCATTAATGAACCGTGACAAGGGTTGGAACACCTCTAGTAAATTTTTGAGGCCACGAATTTTCTGCCTGGAGCATGCTGTTCAGATTATGGAGATGCTACAGTGTAAAGGTGGAGCTAGTGTGCTTGTAATTTGCCATTCAGACTACCAGAAAATCAAAGCACATGCGAGTGCAGTAGCAGAGGAGATAGGCTGTGCTTTTGATTATAATGAGGTTCCGTTAGATACTGCATCCCCTGAAGATTTGACCTTGATAGACCTTGCGATTGATGGTGAAGAACCCAATGAATGTGAAGAAGACTGGACATCTAAATTAGGAATTAACCTGCGGTATTGTGTCAATGCAAGAAAGAACACTCCGTTTAAACAAGCTCCTTTCAAATTGGCTCTGGGAATGTTGTTTCCTGAGAAATTTCCTGATTCAGTTGTCTTATCTGTAAATTGGCAGTCAAAGAGATTTCGCTCCAGAAGGTTGAAGTATTTAGCTCAGGCACAAGCATGTGATGGGATTCAGAGAAAGAATGGTGATCAGTTGGAAGGAAAGACAAATGGCTCCAATGAAAAAAAGATGCTTCAGTATTCAAGGAGAAAATTCAGGTCAAAGCAAGGTTGTTTCTCTGGATCAAACATGGTTCATGTACCGCACCAAGAGTCCATAAATGTGCCAACTGTCTTGAGTGGAGATTCTGGTGGCCAGGTTTCTGAAAATGGCCCTGGCACTGAGAATTCTAGGAGTGATTGTGCATTGTCATCTGTCCTGCAGAAAATGGCCGCTAGTCTGAGTTTGAAAGTTGCTTCTTCACAACCTTCAGATTTCACCCTGGAACCTATGTCAGTGGACGAAAATGATGGACGAGAGGTCCAGAATCAGACTACAGAGGAATTAAATATTGATGGAAAAAGTAGTTGCACAACACCTGATCATTCTATGATGGCTTGTAAGATGGGTGCTTCAGAAATTGGTACTAAGGACAACGAAATTTCGCACGAGAGGATAAATTGTAGCTCACTTACGATTGCTAAAGACAAAAATATTGACATGCTTGCTGAGAATCTTATCGCAAAAGCAATTAACACCAATTATAGCAATAGCCTGGATTTCAATGGAGTGCATCAAGATTTTGATACTACCCACAAGAGTAACAGGGTGGAAGCTACTTCATCTCCTGTTTCATCGGTAACTCAGCAGACGCTTCCCATCATGGAAGAAAATTCTGATCTTGCTAGGAGGAATCATAACACTGAAAGCATGAGCCATGCATCCTTAAAAGAGATGATAGACACTTCTAGTTTGAATGCAAACGACAAGGAGCTTACTGTAAGCTGTGATAAATCAATAAATGAACAGACGTCAAAGATTGGTGCTCATGAAATTCCAAGAGAGCTTTGTGCCCCTGCAGATTCCTGCTGTCAATTTACTTCGGATGTGAGGAAAGAACTGGAAATCCAGCCAAGAAGCATGAATGATGAGGAAATCTGCTCTGGTACTGGTGCTGAGCCATCATTAAAGGATTCTCCTCTGTCAATCCGGGAGTGTTCTGCAATTGAGGGAGAGAAATATGCTAGAGATAGCTTAAATGGAAGTAAAGTTCATTTTTCACAAGACTATAGGGAGCTGCCAAGCTCTGAAAATTCTCCAGGCCTTAGGTCAAATACCCGGAAGAAAAGAAACAGGGAATTGGAACATATACAAGAGATCAATGTAAGTTTCCGTGGCTTTGTTAGAAGTCCATGTGAAGGGTTGAGGTCGAGGGCTTGTAAAGTAGCCTCTGGCAGAAGCATGGCTGAAACCAGCAATTCTGTGGAGGAAAATCCGGAGGTTAAAAGGGCTCGGAGGAAATCATCAGATGTGGTGTATAGCAAGAGCAAAAAGGATGTTATTAAGAGGTCTCACAGGTGTGACATAGATGGTTGCCATATGAGATTTATGACCAAGGAAGAGTTAATGTTACACAAACGCAACCGCTGCCCTCATGATGGGTGCGGAAAGAAGTTCAGGTCCCACAAGTATGCTGTGCTTCACCAGCGTGTCCATGATGATGAACGGCCCCTCAAATGCCCATGGGAAGGTTGCTTAATGTCATTCAAGTGGGCATGGGCCAGGACCGAGCATATACGGGTGCATACTGGGGAAAAGCCATACCGCTGCAAGGTTGAGGGATGTGGCCTTTCGTTCAGATTTGTATCTGATTATAGCAGGCACAGGCGGAAAACTGGGCACTATGTAAAGTCACTTGACTGA 4230 0.4288 MGNVDIPNWLKALPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKKYVLSNLNKSLLKSPELASDSNSVEVSNSSKITSGDSGSDGEARAVFTTRHQELGQSIKRTKGTIQSPLSGVHKQVWQSGETYTLEQFESKSKAFARSVLGMVKEVSPLVIEAMFWKAASEKPIYVEYANDMPGSAFGESKGQFRYIHRRRRKKAYYQRSLDTTDCQEPKIDKIRDTRTSESKDASAHGREDSCLQTSNSTSTPSTFSSNEALHSIRQKSSDSSDEMEGSAGWKLSNSPWNLQVIARSQGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHIGSSKTWYAVPGDYAFAFEELIRNEAYGANIDHLAALTLLGEKTTLLSPEVVVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTVAKEAAVRRAAMNYLPMLSHQQLLYXLTMSFVSRVPRTLLPGVRSSRLRDRQREERELLVKRSFIEDMLQENNLLSILLGKQSTYHAVLWNADLLPDSSKDCPQLPDSTSMTRTSMTDNMSNLTAIDKSSHSCLLDEMSLYMENLTDFYLGEDSLPCHFQTDSGALACVACGILGFPFMTVVQPSERSAMEILPVSGNALSVSDPPSTNEPLKLSLMNRDKGWNTSSKFLRPRIFCLEHAVQIMEMLQCKGGASVLVICHSDYQKIKAHASAVAEEIGCAFDYNEVPLDTASPEDLTLIDLAIDGEEPNECEEDWTSKLGINLRYCVNARKNTPFKQAPFKLALGMLFPEKFPDSVVLSVNWQSKRFRSRRLKYLAQAQACDGIQRKNGDQLEGKTNGSNEKKMLQYSRRKFRSKQGCFSGSNMVHVPHQESINVPTVLSGDSGGQVSENGPGTENSRSDCALSSVLQKMAASLSLKVASSQPSDFTLEPMSVDENDGREVQNQTTEELNIDGKSSCTTPDHSMMACKMGASEIGTKDNEISHERINCSSLTIAKDKNIDMLAENLIAKAINTNYSNSLDFNGVHQDFDTTHKSNRVEATSSPVSSVTQQTLPIMEENSDLARRNHNTESMSHASLKEMIDTSSLNANDKELTVSCDKSINEQTSKIGAHEIPRELCAPADSCCQFTSDVRKELEIQPRSMNDEEICSGTGAEPSLKDSPLSIRECSAIEGEKYARDSLNGSKVHFSQDYRELPSSENSPGLRSNTRKKRNRELEHIQEINVSFRGFVRSPCEGLRSRACKVASGRSMAETSNSVEENPEVKRARRKSSDVVYSKSKKDVIKRSHRCDIDGCHMRFMTKEELMLHKRNRCPHDGCGKKFRSHKYAVLHQRVHDDERPLKCPWEGCLMSFKWAWARTEHIRVHTGEKPYRCKVEGCGLSFRFVSDYSRHRRKTGHYVKSLD 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1844g00003 1410 MobiDBLite consensus disorder prediction 1196 1220 - -
Pral1844g00003 1410 SUPERFAMILY beta-beta-alpha zinc fingers 1358 1401 IPR036236 -
Pral1844g00003 1410 Gene3D Classic Zinc Finger 1318 1368 - -
Pral1844g00003 1410 Gene3D Cupin 9 464 - -
Pral1844g00003 1410 Pfam jmjN domain 17 50 IPR003349 -
Pral1844g00003 1410 ProSitePatterns Zinc finger C2H2 type domain signature. 1320 1342 IPR013087 -
Pral1844g00003 1410 MobiDBLite consensus disorder prediction 224 289 - -
Pral1844g00003 1410 Gene3D Classic Zinc Finger 1369 1408 - -
Pral1844g00003 1410 ProSiteProfiles Zinc finger C2H2 type domain profile. 1348 1377 IPR013087 -
Pral1844g00003 1410 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Pral1844g00003 1410 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1344 - -
Pral1844g00003 1410 SUPERFAMILY beta-beta-alpha zinc fingers 1318 1354 IPR036236 -
Pral1844g00003 1410 ProSitePatterns Zinc finger C2H2 type domain signature. 1350 1372 IPR013087 -
Pral1844g00003 1410 ProSiteProfiles Zinc finger C2H2 type domain profile. 1378 1404 IPR013087 -
Pral1844g00003 1410 SMART cupin_9 291 460 IPR003347 -
Pral1844g00003 1410 MobiDBLite consensus disorder prediction 80 94 - -
Pral1844g00003 1410 SMART JmjN_1 15 55 IPR003349 -
Pral1844g00003 1410 SMART c2h2final6 1378 1404 IPR013087 -
Pral1844g00003 1410 SMART c2h2final6 1318 1342 IPR013087 -
Pral1844g00003 1410 SMART c2h2final6 1295 1317 IPR013087 -
Pral1844g00003 1410 SMART c2h2final6 1348 1372 IPR013087 -
Pral1844g00003 1410 MobiDBLite consensus disorder prediction 80 108 - -
Pral1844g00003 1410 MobiDBLite consensus disorder prediction 224 247 - -
Pral1844g00003 1410 MobiDBLite consensus disorder prediction 1196 1212 - -
Pral1844g00003 1410 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
Pral1844g00003 1410 MobiDBLite consensus disorder prediction 248 274 - -
Pral1844g00003 1410 ProSitePatterns Zinc finger C2H2 type domain signature. 1380 1404 IPR013087 -
Pral1844g00003 1410 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Pral1844g00003 1410 SUPERFAMILY Clavaminate synthase-like 292 458 - -
Pral1844g00003 1410 FunFam Probable lysine-specific demethylase ELF6 1345 1374 - -
Pral1844g00003 1410 ProSiteProfiles Zinc finger C2H2 type domain profile. 1318 1347 IPR013087 -
Pral1844g00003 1410 MobiDBLite consensus disorder prediction 885 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1844g00003 Pral-Chr1844 27271 36520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1844g00003 1 861 C2H2 Transcription Factor Family AT5G04240 58.476 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1844g00003 JmjC 4.6e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1844g00003 - - adu:107467970 1525.38