Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1842g00005 ATGGCGCTCGATGACCATGCCAATCCCAATTCCCATCCCTTCGACGCCAAAGGCTACGCTCTCACCACCAACATCCTCCTCACCATCACCTTCTTCTTGTTGTTCCTCATCATCCTACTGATTTTCCTTCACTTCTACGCCCGCTGGTACCTCCGCCGTGCCCGCCTCCGTCACCGCCAGCGTCGCCGTTCATATCTTGTCTTCTACGTCGACGACTCCGTCCCCTCTGACGCCCCAACATCCGTCGGTCTTGACCCCTCAGTGATTCAGTCTCTTCCTGTCTTCGTTTATTCCGCCCACTCCGACCCAGTGGAATGCGCTGTGTGCTTGTCTGATTTCGAAGAGAACGAATCGGGTAGGGTTTTGCCCAGATGCAGCCACACTTTTCACGTCGAATGCATCGACATGTGGTTCCAGTCTCACTCGACCTGCCCTCTCTGTAGATCTTTGGTTGAACCTGTTCCGGCCGGTGACCGACCCGGACCGGAGGTGGTGATCAATGTGTGCGAACAGGGTTCGAGTTCAGGATGTCGTCAGGATGGACAAGAAGAGAACCGAAGCGGCCGGACGCTCTGTTCTTCGTCGTCTTCAGTTGGGTTGAGGCGGAAGCCGTCGTCCGTTGGTGTAGCAATTGAGGTGAGCAGAAGCTTCGGGAAAGAGGCGGAGGGGTCGACGACGTCGTTTAGGTCACCGGGGGGACGTTTGCTATCGTTCCAGCGAGTACTGAGCAGAGAGAAGAAGCCGAGTCCTTCGTCCCCATCGTCGGAAAAGAGTGCCGCTGGATGCGGCTCGATGACCGAGATAGAGACGAGTCAGTGA 819 0.5641 MALDDHANPNSHPFDAKGYALTTNILLTITFFLLFLIILLIFLHFYARWYLRRARLRHRQRRRSYLVFYVDDSVPSDAPTSVGLDPSVIQSLPVFVYSAHSDPVECAVCLSDFEENESGRVLPRCSHTFHVECIDMWFQSHSTCPLCRSLVEPVPAGDRPGPEVVINVCEQGSSSGCRQDGQEENRSGRTLCSSSSSVGLRRKPSSVGVAIEVSRSFGKEAEGSTTSFRSPGGRLLSFQRVLSREKKPSPSSPSSEKSAAGCGSMTEIETSQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1842g00005 272 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Pral1842g00005 272 SUPERFAMILY RING/U-box 93 154 - -
Pral1842g00005 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 153 IPR013083 -
Pral1842g00005 272 Pfam Ring finger domain 105 148 IPR001841 -
Pral1842g00005 272 MobiDBLite consensus disorder prediction 242 272 - -
Pral1842g00005 272 FunFam RING-H2 finger protein ATL3 76 153 - -
Pral1842g00005 272 CDD RING-H2_EL5-like 105 148 - -
Pral1842g00005 272 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 154 IPR044675 -
Pral1842g00005 272 MobiDBLite consensus disorder prediction 172 201 - -
Pral1842g00005 272 MobiDBLite consensus disorder prediction 244 272 - -
Pral1842g00005 272 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1842g00005 Pral-Chr1842 26427 27630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1842g00005 16 253 Rapid Response to Elicitors AT3G16720 48.689 6.40e-61 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1842g00005 - - pcin:129320593 225.713