Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1834g00003 ATGCTGTTTTTGTTGTTTATGAATTACGATGATGGTGTTTTTTATGGTCAAAGCTATGCTTCCATTGAAGCAATTGAGCATGATAGCCATTCGGACACTCGGATTTTGATCTCTTATTGGATTCTTCTCTCACTGATATACCTCTTTGAGTATCCTTTCCTCAAGCTTCTTCAATGGTTTCAGTATTGGCATTACATGAAGCTAATCATGGTCGCCTTCCTTGTGATTCCGGATTTTGGAAGATCTGCTTATGTCTATAATCACTTCATTCAATCATGCATCCACATGAATCCTCAAGCAGTCATAAGCAGATTCAGGAACTGGAAGAACATATTTGTCAAGAAAGAAGACTTTACAATGCAGGCTGAGAAGTATATAACACAGAATGGAATTGAAGTCTTAGAGGAACTCATTGCTAGCAAGATCATAGAGAAAAGTCTTAATTCAGAAACAAGAACATCAGTTCCAACTGCGGAGAAGAATGAGATCCTGGAGACAAATAGAGGAAGGCTTCTCATGGAACAGAAAGACGCCAAAGATTTGGAGATGATTGAAAAAGAGCAAGTTCCTGAAGGCAAGCAAGTTAATAGAGCCTTGGAAAGACTCAAATCAAATGAAAGCACTTTATCTGCCATGGCAAAAACCAAAAAAATGGCAGCAGACACAGAATATGGAACACATCCTCAGATTTCTGCATCTGAGAATGTACAGAAAGAATGGACTTGTGCCATATGCCAGTTGACGATGCCTTCTGAAGCTAATTTGAATTCCCACGTGCAAGGAAGAAAGCATAAGGCTGCTTGTGAAGCACTAAACGCGAAAACTAAAGGAACGCCAGTGACAGACACAGGAAGTGGAGCATCTTCTCAGGTTTCTGCATCTAAAGATGTTAATACAGCCATGGACAGATTCAAATCAAATGAAAGCACTTCACCTGCCATGGCGAAAACCGAAAAAATGGCAGCAGACACAGAACACGGAACACATCCTCAGATTTCTGCATCTGAGAATGTACAGAAAGAATGGACTTGTGCCATATGCCAGCTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTGCAAGGAAGAAAGCATAAGGCTGCTTGTGAAGCACTGAATACAAAAACTAAAGGAACGCCGGTGACAGACACAGGAAGAGGAGCATCTTCTCAGGTTTCTGCATCTAAGGACGTACAGATAATGTGGACTTGTAAAATATGTCAATTGAAAATACTTTCTGAGGTTGATTTGAATTCCCACTTGCAAGGAAGAAAGCATAAGGCTGCTTGTGAAGCACTGAACGGGAAAACTAAAGGAACCGAAGTGACAGACACAGGAAGTGGAGCATCTTCTCAGGTTTCTGCATCTAAAGATGTACAGAAATGTAGTTTGAATTCCCACCTGAAAGGAAAGAAGCATAAGGCTGCTTGTGAAGCACTGAACGCAAAAAGCCAGCTTGTTGCTGAGAAAGTTCCGGTGAAGAAGAATGATGAGTCCACTGGAGAAGAGGAGATGATAATCTATACACCAAGTGCATTAGAACAGAATACCACAAACAGTCATCATCCAAAAATGGAGCATAAGAATGTTGAAACTATCAATGTTAGTCAGCAGAATAAAATCAAAGACGTTGATGCCAATACCACCAAGGTGCAAGAATTGCAGAAGAAGGTAGGAACATCAATTGGAATGAACAGTTCCAGATTAAGATGTGATATGTGTAATGCAAAATGCACCAGTGAAGGTGACTTGGCTTCTCACTTGCGAGGTAGCAAGCACTTGGCTCAAATTCAATTACTTACTGCCCATGGGGTCTTGTAG 1824 0.4084 MLFLLFMNYDDGVFYGQSYASIEAIEHDSHSDTRILISYWILLSLIYLFEYPFLKLLQWFQYWHYMKLIMVAFLVIPDFGRSAYVYNHFIQSCIHMNPQAVISRFRNWKNIFVKKEDFTMQAEKYITQNGIEVLEELIASKIIEKSLNSETRTSVPTAEKNEILETNRGRLLMEQKDAKDLEMIEKEQVPEGKQVNRALERLKSNESTLSAMAKTKKMAADTEYGTHPQISASENVQKEWTCAICQLTMPSEANLNSHVQGRKHKAACEALNAKTKGTPVTDTGSGASSQVSASKDVNTAMDRFKSNESTSPAMAKTEKMAADTEHGTHPQISASENVQKEWTCAICQLTMPSEANLNSHLQGRKHKAACEALNTKTKGTPVTDTGRGASSQVSASKDVQIMWTCKICQLKILSEVDLNSHLQGRKHKAACEALNGKTKGTEVTDTGSGASSQVSASKDVQKCSLNSHLKGKKHKAACEALNAKSQLVAEKVPVKKNDESTGEEEMIIYTPSALEQNTTNSHHPKMEHKNVETINVSQQNKIKDVDANTTKVQELQKKVGTSIGMNSSRLRCDMCNAKCTSEGDLASHLRGSKHLAQIQLLTAHGVL 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1834g00003 607 SUPERFAMILY beta-beta-alpha zinc fingers 398 437 IPR036236 -
Pral1834g00003 607 SUPERFAMILY beta-beta-alpha zinc fingers 331 376 IPR036236 -
Pral1834g00003 607 SUPERFAMILY beta-beta-alpha zinc fingers 566 601 IPR036236 -
Pral1834g00003 607 SUPERFAMILY beta-beta-alpha zinc fingers 231 274 IPR036236 -
Pral1834g00003 607 Pfam Zinc-finger of C2H2 type 342 366 - -
Pral1834g00003 607 Pfam Zinc-finger of C2H2 type 403 427 - -
Pral1834g00003 607 Pfam Zinc-finger of C2H2 type 240 264 - -
Pral1834g00003 607 Pfam Zinc-finger of C2H2 type 571 594 - -
Pral1834g00003 607 Pfam TB2/DP1, HVA22 family 19 92 IPR004345 -
Pral1834g00003 607 PANTHER OS06G0651300 PROTEIN-RELATED 464 605 - -
Pral1834g00003 607 SMART ZnF_U1_5 400 434 IPR003604 GO:0003676|GO:0008270
Pral1834g00003 607 SMART ZnF_U1_5 237 271 IPR003604 GO:0003676|GO:0008270
Pral1834g00003 607 SMART ZnF_U1_5 567 601 IPR003604 GO:0003676|GO:0008270
Pral1834g00003 607 SMART ZnF_U1_5 339 373 IPR003604 GO:0003676|GO:0008270
Pral1834g00003 607 ProSitePatterns Zinc finger C2H2 type domain signature. 572 594 IPR013087 -
Pral1834g00003 607 MobiDBLite consensus disorder prediction 276 295 - -
Pral1834g00003 607 Gene3D Classic Zinc Finger 546 600 - -
Pral1834g00003 607 Gene3D Classic Zinc Finger 317 372 - -
Pral1834g00003 607 Gene3D Classic Zinc Finger 214 270 - -
Pral1834g00003 607 Gene3D Classic Zinc Finger 387 433 - -
Pral1834g00003 607 ProSitePatterns Zinc finger C2H2 type domain signature. 344 366 IPR013087 -
Pral1834g00003 607 SMART c2h2final6 570 594 IPR013087 -
Pral1834g00003 607 SMART c2h2final6 403 427 IPR013087 -
Pral1834g00003 607 SMART c2h2final6 240 264 IPR013087 -
Pral1834g00003 607 SMART c2h2final6 342 366 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1834g00003 Pral-Chr1834 17656 20892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1834g00003 335 498 C2H2 Transcription Factor Family AT2G19380 22.564 1.44e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1834g00003 TB2_DP1_HVA22 2.5e-15 No_clan