Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral182g00004 ATGGGCTTGCATGTTCGAATCTTTGTCTTGTTGATGATAGCTTTTACAGGAACCTTTTGTACTGGAGATACCGACTTACTTGACGTTGCAGCAATTAATAGTTTATATGTTGCTCTGGGCTCACCGCCTCTTCAAGGTTGGAAAACCACTGGGGGAGATCCGTGTGCAGAATTGTGGCAAGGCGTGGCTTGTGTCTTCTCCAACATAACTCAATTAAGTCTCAGAGGCATGAACTTGGGTGGAGAGCTGGGCAGTAATTTAAATTTTCCTTCCATCATTGAGATAGATCTTAGCAACAACCACATCGGAGGACCTATTCCATCCACACTACCCCTTACTTTGAGGAACTTGTCTCTTTCAAGTAACCAGTTAAATGGAAGTATTCCAGATGCCCTCTCCTCTCTAACACAATTGTCAGATTTGTCATTAAGTAATAACCTTCTAGATGGACAAATCCCTGATGTTTTTCAGCAGCTTACTGGCCTGATAAACATAGACCTGTCAGCTAACAAGTTGAGTGGTCAGCTACCCCTCTCACTGGGAAATTTGTCATTGCTTTCAACATTACATTTGCAGAACAATGAACTTTCTGGGTTTCTTAATGTTTTGCAAGACCTTCCTCTTCAGGATTTGAATATAGAGAACAATTTATTCTTTGGGCCAATTCCTCCACAATTGTTGAGTATCCCAAATCTCAGAAAAGATGGAAATCCATTTAATACTACTGTCATCCGATCACCTCCAGCTGCAGCCCCAGGTCCTCTTGCTATGGTCCCATCACCTGCTGAAGCATCTTGGAATGTGGCAAATAGTCCATTTACCTTGGTTGCAGCGATACCTGCAAGTGCTAGGAAGTATTTTGTATCTAAGAATGTTATTTGGATTGTCATTGCTGGGTTCTTGGTGTTTATTGCACTAGGGGTCTGTCTTTTTATATTGTGGTGCTTTAAGAAAAGGCCGGAAAACAAAAATGCTCAAAAAAGTGATGTGGGTTTGGGCCCAGTGTCGTTGCATAAACATCAATACAGTGACCCTTTGGAGAAAGCATCTTTGAAACCAATAAGATCTCTTGGATATGGCGAACAAAATAGAAGAACAAATATGACTCCAGATGTTCAGAATGAACAGGAAATATATATGAACAGAGTATCAGCAAGTTCCAAACTTGCAACATTGCAGCCACCACCATCTAACCTTCCCATCAATCTTGGCGAAGAGGACCTAACCAAGCCAGTTATGCCTACCAAAGTTACTGAAAGACATGTTATGACTAGTTCATTGCATGTTTATACTATTGCATCGCTTCAGCAGTATACAAATAGTTTTTCCCAAGAAAATTATATTGGTGAAGGCACACTGGGTGTCATTTATCGGGCTGAGCTCCCTGATGGAAAGCAACTTGTAGTGAGAAAACTGGATGCTACTTCTATAGGACATGAACAGTTTCTTCAATTAGTGTCCAATATTTCCAAAATTCAACATGCTAACATTGTGAAGCTTATGGGCTACTGTGCTGAGAATGGTCAACAACTTCTTGTGTATAATTACTTGAGCATTGGAACTCTTCATGATGCACTACATGAAGATAATGAACTCCATGCTAAACTGTCATGGAATGCACGCATTCAGGTGGCACTTGGAGCTGCAAGGGCTTTAGAGTATCTGCATGAGAGCTTCCAGCCACCTATTGTGCATCAAAATATAAAATCAAATAATGTTCTACTGAATACTGAGCTTGAAGTATTTGTCTCTGATTGTGGATTTGGTCCTTTACTATCTTCTGGATCTGCTGGTCAGTTGTCAGGACGCCTCCTAACAGCGAATGGTTATGGTGCGTCAGAATTTGAGACTGGGAGTTATACAAAGCAGAGTGATGTCTTCAGTTTTGGAGTTGTAATGCTAGAACTCCTCACTGGACGAAAATCCTGTGACAGGTATCAGAGCGGTGACGACGGGGCATGGTTCATACTCGTACGATGGTTCATACTCGTACGATGGAAGATTGGAATCATTCGCCCCAGTAAGAGTCCTTTTTCAAGCCCGGTACTGCTAGTAAAAAAGAAGGATGGTAGTTGGCGTTTCTGTGTGGACTATAGGGCCTTAAATAAGATAACCATCCAGGATAAGTTTCCCATCCCAGCCATTGAAGAACTGCTAGATGAGCTAGGAGGAGCCCAGATATTTTCCAAATTGGACTTAAAATCCGGTTATCACCAGATTCGCATGAAGCAGGGGGAAGAGTTGAAGACAGCTTTCAGAACGCATGACGGCCATTATGAATTCCTGGTCATGCCCTTCGGTTTGAAAAATGCTCCCTCTACCTTCCAATCCTTAATGAATGACATTTTTAGACAATATTTGCGGAAGTTTGTCCTTGCTTTTTTTGATGACATCTTGGTTTATAGTAGTGACAGGACAACTCACTTGCAACACCTTAGAGTTGCTTTCCAGATCCTGCAGCAGCACTCCTTGGTGATCAATACGAAAAAATGCGCCTTTGCTCAGTCTTAG 2511 0.4182 MGLHVRIFVLLMIAFTGTFCTGDTDLLDVAAINSLYVALGSPPLQGWKTTGGDPCAELWQGVACVFSNITQLSLRGMNLGGELGSNLNFPSIIEIDLSNNHIGGPIPSTLPLTLRNLSLSSNQLNGSIPDALSSLTQLSDLSLSNNLLDGQIPDVFQQLTGLINIDLSANKLSGQLPLSLGNLSLLSTLHLQNNELSGFLNVLQDLPLQDLNIENNLFFGPIPPQLLSIPNLRKDGNPFNTTVIRSPPAAAPGPLAMVPSPAEASWNVANSPFTLVAAIPASARKYFVSKNVIWIVIAGFLVFIALGVCLFILWCFKKRPENKNAQKSDVGLGPVSLHKHQYSDPLEKASLKPIRSLGYGEQNRRTNMTPDVQNEQEIYMNRVSASSKLATLQPPPSNLPINLGEEDLTKPVMPTKVTERHVMTSSLHVYTIASLQQYTNSFSQENYIGEGTLGVIYRAELPDGKQLVVRKLDATSIGHEQFLQLVSNISKIQHANIVKLMGYCAENGQQLLVYNYLSIGTLHDALHEDNELHAKLSWNARIQVALGAARALEYLHESFQPPIVHQNIKSNNVLLNTELEVFVSDCGFGPLLSSGSAGQLSGRLLTANGYGASEFETGSYTKQSDVFSFGVVMLELLTGRKSCDRYQSGDDGAWFILVRWFILVRWKIGIIRPSKSPFSSPVLLVKKKDGSWRFCVDYRALNKITIQDKFPIPAIEELLDELGGAQIFSKLDLKSGYHQIRMKQGEELKTAFRTHDGHYEFLVMPFGLKNAPSTFQSLMNDIFRQYLRKFVLAFFDDILVYSSDRTTHLQHLRVAFQILQQHSLVINTKKCAFAQS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral182g00004 836 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 668 770 - -
Pral182g00004 836 Pfam Protein tyrosine and serine/threonine kinase 445 643 IPR001245 GO:0004672|GO:0006468
Pral182g00004 836 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 408 516 - -
Pral182g00004 836 Gene3D Transferase(Phosphotransferase) domain 1 518 665 - -
Pral182g00004 836 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 666 836 IPR000477 -
Pral182g00004 836 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Pral182g00004 836 SUPERFAMILY Protein kinase-like (PK-like) 420 667 IPR011009 -
Pral182g00004 836 SUPERFAMILY DNA/RNA polymerases 665 835 IPR043502 -
Pral182g00004 836 Gene3D Phosphorylase Kinase; domain 1 405 516 - -
Pral182g00004 836 Gene3D Ribonuclease Inhibitor 28 244 IPR032675 -
Pral182g00004 836 Gene3D - 710 835 IPR043128 -
Pral182g00004 836 ProSiteProfiles Protein kinase domain profile. 442 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral182g00004 836 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 685 834 IPR000477 -
Pral182g00004 836 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 517 666 - -
Pral182g00004 836 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 738 770 - -
Pral182g00004 836 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 655 IPR046959 -
Pral182g00004 836 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 250 - -
Pral182g00004 836 CDD RT_LTR 669 836 - -
Pral182g00004 836 SUPERFAMILY L domain-like 28 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral182g00004 Pral-Chr182 58617 75108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral182g00004 28 662 Strubbelig Receptor Gene Family AT4G03390 49.483 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Pral182g00004 PK_Tyr_Ser-Thr 1.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral182g00004 - - ahf:112783685 770