Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral182g00002 ATGTCTAAGAGGGTTCTTTGCAAATTCTTTGCCCATGGAGCATGTTTGAAGGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAACAACATATGTACGTTTTATCAGAAAGGAGCCTGTGCCTATGGCAGTCGCTGCAGATATGACCATGTCAAAGCTTCCCGTGAACAGTCCTATCATCCATCTTCTTCTGCCAGTGTACACCCCCTAAATTCAGATTCTTCTATAGTTGGTAGTACTAGAGTTGCATCAAATGGGGCTGCTACAATTCCTGAATTGACTACTCGTAGTGGACCTTCCTTTCCTATTATTCCTGCATGGAATGGAGAATCTGAGCCTCATATTCCTGATTATTTTCAAGCTTGGAATCCAGAACCTGGGCATCAGGATTTTTTAGAGGATAGTGATGTCAGTGAATCCAGAATTAATGATCCTTCTGAGCGTCCTATCTGTTCTTTTGCTGCTGCTGGTAATTGTCCTAGGAAGGAGAAATGCCCTTTTATTCACGGAGATTTGTGTCCTACCTGTGGAAAGCACTGCTTACATCCTTTTCGACCTGAAGAAAGAGAGGAACATACGAATGCTTGCCAAAAAAAGCAAAAGCATCTTGAGGCTTTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCCAAGCCCACTGCAGCTGAACGCAAGTTTGGGCTGCTCTCTGAGTGTGATCATCCCTTCTGCATATCTTGTATTAGGAATTGGCGTAATAGTAACCCAACTCTGGGAATGGACGTGAATACCACATTGAGGGCCTGTCCAATTTGTCGTAAGCTCTCTTACTTTGTGATTCCAAGTGTCATTTGGTACTCTACAACGGAAGAAAAACAGGAAATCATCGACAGCTACAAGGAAAAGCTCAAATCAATTGATTGCAAGCATTTTGACTTTGGGAATGGAAACTGCCCTTTTGGTACTAGCTGTTTTTACAAGCATGCTTACCGAGATGGCAGACTTGAGCAAGTAGTTCTGAGGCATCTTGGGGCTGCAGATGGCAACACTGTGATTGCTAAAGACGTCAGGCTATCAGATTTCCTTTCTAACATGCATTTAAGATGA 1113 0.4295 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGACAYGSRCRYDHVKASREQSYHPSSSASVHPLNSDSSIVGSTRVASNGAATIPELTTRSGPSFPIIPAWNGESEPHIPDYFQAWNPEPGHQDFLEDSDVSESRINDPSERPICSFAAAGNCPRKEKCPFIHGDLCPTCGKHCLHPFRPEEREEHTNACQKKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRNSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDSYKEKLKSIDCKHFDFGNGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNTVIAKDVRLSDFLSNMHLR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral182g00002 370 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
Pral182g00002 370 CDD RING-HC_MKRN 215 275 - -
Pral182g00002 370 Pfam RNA-binding, Nab2-type zinc finger 153 173 - -
Pral182g00002 370 Pfam RNA-binding, Nab2-type zinc finger 309 331 - -
Pral182g00002 370 ProSitePatterns Zinc finger RING-type signature. 241 250 IPR017907 -
Pral182g00002 370 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Pral182g00002 370 SUPERFAMILY RING/U-box 206 281 - -
Pral182g00002 370 Gene3D - 1 31 - -
Pral182g00002 370 SMART c3hfinal6 304 332 IPR000571 GO:0046872
Pral182g00002 370 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Pral182g00002 370 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Pral182g00002 370 SMART c3hfinal6 149 174 IPR000571 GO:0046872
Pral182g00002 370 SMART ring_2 217 274 IPR001841 -
Pral182g00002 370 Gene3D - 32 177 - -
Pral182g00002 370 Pfam Zinc finger, C3HC4 type (RING finger) 217 274 IPR018957 GO:0046872
Pral182g00002 370 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Pral182g00002 370 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Pral182g00002 370 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Pral182g00002 370 Coils Coil 192 212 - -
Pral182g00002 370 ProSiteProfiles Zinc finger C3H1-type profile. 304 333 IPR000571 GO:0046872
Pral182g00002 370 ProSiteProfiles Zinc finger RING-type profile. 217 275 IPR001841 -
Pral182g00002 370 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Pral182g00002 370 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Pral182g00002 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 280 IPR013083 -
Pral182g00002 370 PANTHER MAKORIN-RELATED 5 367 IPR045072 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral182g00002 Pral-Chr182 32946 37329 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral182g00002 zf-C3HC4 2.9e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral182g00002 K15687 - gmx:100787817 608.986