Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral182g00001 ATGACAGATCCTCCCTCCAATTTCTTCTCCAAGTCCTTCAACTTCATCCCCCTCCATCCTCACTTCTACCCTTCCAATTCTTACAGTAGTTTCTCCATTCAATTCCAACCCCCTCCTCCTTCTGTTCCTCCTCCTGCTGTAAGAGAAGCCCTTCCTCTGCTGAACAATCTCAGTCTTCTCACAAACCAGTACAAGCAAGCACCAGCTGAACAACCTTCAAGCAATAGTAAGGAACCATTAATTCTAGATAGAGAGGCTGAGACTTCCAGCGATGAAACTGTGACTGTTGCTCTACGCATAGGACTCCCCTCCATTACTGCTACTAATACTACCACTAGCAGTAGCAGTAGTAATACTCAGATTTCAAACTCCTGTTCCTCCATTGAAACGATGACCATGGAGAAAGAAGAAGTTGGTGGTGGTGGTGGGGGTCGTGGAGGTGGTGTCATTTCTGGGCACTACTCTTTTGATCCCTTGGCCAAAGGCCAATACTGGATCCCTACTCCTTCTCAGATTCTCATTGGCCCTACACAGTTCTCTTGCCCTGTCTGTTCCAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGGTCTCAGTACAGAAAGGGTCCAGATTCTCTAAGAGGAACACAACCTACGGCAATGCTAAGGCTACCATGTTTCTGTTGTGCGCCAAACTGCAAGCACAACATAGAGCATCCAAGGGCAAGGCCTCTGAAGGATTTCAGAACCCTGCAAACTCATTACAAGAGGAAGCACGGCACGAAACCCTACATGTGCAGAAAATGCAGCAAAGCTTTCGCTGTGAAAGGTGATTGGAGGACCCACGAGAAGAACTGTGGCAAAATTTGGTATTGCCTTTGTGGTTCTGACTTCAAACACAAGAGGTCTCTTAAAGACCACATTAGGGCTTTTGGCCATGGCCATGGCGGAGCTTTTCCTGGCCTTGATAATTGCAGCTTGCTGGAAGAAGATGAAGCAAATTCTGAGATTGAACATGATGCTGAAAACTCAATGTGA 1035 0.4647 MTDPPSNFFSKSFNFIPLHPHFYPSNSYSSFSIQFQPPPPSVPPPAVREALPLLNNLSLLTNQYKQAPAEQPSSNSKEPLILDREAETSSDETVTVALRIGLPSITATNTTTSSSSSNTQISNSCSSIETMTMEKEEVGGGGGGRGGGVISGHYSFDPLAKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPNCKHNIEHPRARPLKDFRTLQTHYKRKHGTKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIRAFGHGHGGAFPGLDNCSLLEEDEANSEIEHDAENSM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral182g00001 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 283 319 IPR013087 -
Pral182g00001 344 Pfam Zinc finger, C2H2 type 179 198 IPR013087 -
Pral182g00001 344 SMART c2h2final6 179 201 IPR013087 -
Pral182g00001 344 SMART c2h2final6 289 312 IPR013087 -
Pral182g00001 344 SMART c2h2final6 263 283 IPR013087 -
Pral182g00001 344 SUPERFAMILY beta-beta-alpha zinc fingers 172 201 IPR036236 -
Pral182g00001 344 PANTHER ZINC FINGER PROTEIN WIP2 20 340 IPR043584 GO:0003700|GO:0010468
Pral182g00001 344 FunFam zinc finger protein WIP2-like 178 201 - -
Pral182g00001 344 Gene3D Classic Zinc Finger 259 315 - -
Pral182g00001 344 Gene3D Classic Zinc Finger 178 201 - -
Pral182g00001 344 FunFam Zinc finger protein WIP2 232 314 - -
Pral182g00001 344 SUPERFAMILY beta-beta-alpha zinc fingers 247 283 IPR036236 -
Pral182g00001 344 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Pral182g00001 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral182g00001 Pral-Chr182 21372 24528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral182g00001 1 337 C2H2 Transcription Factor Family AT3G57670 53.525 2.16e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral182g00001 zf-C2H2_6 9.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral182g00001 - - gmx:100794446 395.971