Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1825g00013 ATGGTCGCGCTATTCACTGTAGGCGTAGCAGCAATCAGCTGTTCCCAGCTTCACCACTCTTGCACCCACCACCCTCCCCTCCCTTTCCCTCCTCCCCTCCTCTATATCTGTGTCACATTCTCCCTCTCCTCCTTCCTTCAGCTTCAAAGGAGCACCGTCGATGCGTCGCCGGAGGCCACTGTCGGGGGAGGTGCAACCAGCAACGACCTCTCCGTTTTCGCCGGAGGCGGCCCTAAGTTCGAGGACTTCCTGGGCGGCTCCTCCGTTACATCGGTCACATCTGCAGTACCCACGCCGCCTGCTTCTCAGTTCTCCGCCGACAACGTATTCGGTTCTGAGCTCAAAACCATAACCGCCGGGTTCCTCCCCGGCTTGGCCGCCGCTGAACGAGCTGAGCCGCAAAAACAGGCGCTGGCTCTAACCGTGCCGTCCTCTAAGAAGACTGCGGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCCGGCATAGATGGACGGGAAGATACGAAGCACATCTATGGGATAATAGTTGCAGAAGAGAAGGTCAAAGCAGGAAAGGAAGGCAAGTATATTTGGGTGGCTACGATAAGGAAGAGAAAGCAGCCAGGGCTTATGATCTTGCCGCTCTCAAATATTGGGGTCCGACCACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTGGAAGAGATGAAGAAAATGACAAGACAGGAATTTGTTGCTTCGCTACGAAGGAAGAGTAGTGGTTTTTCTAGAGGAGCATCAATATACAGAGGAGTGACAAGGCACCACCAGCATGGGCGATGGCAAGCAAGAATCGGCAGAGTTGCCGGAAATAAAGACCTTTATCTCGGCACTTTTAGTACTCAAGAAGAAGCTGCTGAAGCATACGATATAGCAGCGATAAAATTTAGAGGGCTAAGTGCAGTGACCAACTTTGACATGAGCCGATACGACGTGAAGAGCATAGCCAACAGCAGTCTTCCAGTTGGAGGATTCTCATCCAAACCCAAGAACTCATCAGATTCTTCTGCATCAGACAGCAAAAGCAACGATGGAGGTAGTCGATCGACAGATAACATCGACCGGGATCCATCCTCCACCTCATCGGCAACCTTTGCCTCCCAACCCTCGACCTCCAACCTCAGCTTCGCCGTACCCATCATCAAACAAGATCCGACCACTGATTACTGGTCCAACATCTTTGGTTACCAGAACCCTGCATCTTTCAAAAACATTCCAAACGGTGTTACCATGGCCTCTCCTTTGCAAAACTACAACAATAATAGCAGCTCACCGGTACCGTTCAGCTTGGAGTTGCAGAGAAATAACAATGCATTTATGAATGAGGGTGTGGTTGTTCAGAACATTCATCAGCAACAAAGTGGAAGCAGCAATAATAATAACAGCAGTAGTAGTGCTGGAACAGTGCATTCGAGTTCAAGTTCAGGGATCCCATTGGCCACGCCCATAGGTTTAAATAGTAATGGTGGTTATGAGAGTTCTTCTGAATATGGAAACTGGAGCATAGGGCCTGGTGGGTTGCACACATTCCAAACACATGCAAAAGGAAGTCTCTATCAAACGCCAATATTTGGGATGGAATGA 1620 0.5025 MVALFTVGVAAISCSQLHHSCTHHPPLPFPPPLLYICVTFSLSSFLQLQRSTVDASPEATVGGGATSNDLSVFAGGGPKFEDFLGGSSVTSVTSAVPTPPASQFSADNVFGSELKTITAGFLPGLAAAERAEPQKQALALTVPSSKKTADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKKMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLSAVTNFDMSRYDVKSIANSSLPVGGFSSKPKNSSDSSASDSKSNDGGSRSTDNIDRDPSSTSSATFASQPSTSNLSFAVPIIKQDPTTDYWSNIFGYQNPASFKNIPNGVTMASPLQNYNNNSSSPVPFSLELQRNNNAFMNEGVVVQNIHQQQSGSSNNNNSSSSAGTVHSSSSSGIPLATPIGLNSNGGYESSSEYGNWSIGPGGLHTFQTHAKGSLYQTPIFGME 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1825g00013 539 ProSiteProfiles AP2/ERF domain profile. 158 224 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 SUPERFAMILY DNA-binding domain 157 226 IPR016177 GO:0003677
Pral1825g00013 539 CDD AP2 157 226 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 PRINTS Ethylene responsive element binding protein signature 300 320 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 113 428 - -
Pral1825g00013 539 FunFam AP2-like ethylene-responsive transcription factor ANT 157 226 - -
Pral1825g00013 539 SMART rav1_2 260 324 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 SMART rav1_2 158 230 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 SUPERFAMILY DNA-binding domain 259 320 IPR016177 GO:0003677
Pral1825g00013 539 ProSiteProfiles AP2/ERF domain profile. 260 318 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 Gene3D AP2/ERF domain 260 320 IPR036955 GO:0003700|GO:0006355
Pral1825g00013 539 Gene3D AP2/ERF domain 158 226 IPR036955 GO:0003700|GO:0006355
Pral1825g00013 539 MobiDBLite consensus disorder prediction 333 381 - -
Pral1825g00013 539 FunFam AP2-like ethylene-responsive transcription factor 259 320 - -
Pral1825g00013 539 MobiDBLite consensus disorder prediction 463 487 - -
Pral1825g00013 539 Pfam AP2 domain 260 310 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 Pfam AP2 domain 158 216 IPR001471 GO:0003700|GO:0006355
Pral1825g00013 539 CDD AP2 259 320 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1825g00013 Pral-Chr1825 122621 126122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1825g00013 99 539 AP2-EREBP Transcription Factor Family AT5G57390 54.255 9.57e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral1825g00013 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1825g00013 K09285 - gmx:100803558 560.836