Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1824g00005 ATGCAAGGGACAAGGGGTAGAATAGGTTCCTTGCCTGAAACCTTGGAATTTGATTGCGGATCTACTTCAAGTAATGCTACTGTGGATCAGCAGGTTTTCTGGGATAGCATGACGAATCCTGTAGAAAATCAAGTGCCTCAATTTATGCTTTCGCCTGGTGATATGAACCCATTGTATGCAAATTCAATTAACCATGAATGGAAAAGCATGAATAATTGGAGAATGGGTGAGCCAAGTTCCAGTGGTTCACATATTGCAATTGACAATGACGAGCAGAAAAGAGAATATGGATGGTCATCTTCAACAAGTGTTGATGCTGTTGATGGTTCAAGATTAGAGCGGCACTTTGAATCAACCAATTTAGTTTCTTTGGACAATGTCAATACAAGTCCTATGTGTATGAACAACTCCAACCCTCATTCTGTAACTCAGAATATCAACCTAAATGCCAGTTCAGCAGACACTGGCCATAATATGGGGCAACATCTTGAGCATCCTGGCTTGAACAAAGCAAGTGGATCAGTAAATGAGCCTATCCCACCTATTGTTGGTCCCGCACTGTTTTCTCATCCTTCTGGAAGTAACTTGGTAGATAATAGTAATGGTAGGGCTCTTGATGCCCGGCGTGCATCTTGTAAAAGAAAGACTGTTGAAGGATATGTTGGACAATCTTCAGGCGGGGAAAGTTCTAGCTGCAGCCAGTATATAGAAAGCAGTGCTTGGCGTACACGTCCTACTCAGAGTAATTCTCGGAGCAGTTTAAGCAGATCTGCCTTGTCAGCACAGATAAGTTCAAGACATGGCCCAGATGTGGGCAATGAATCTCCAGAGAGCTTTAATAATCTGAATGTCGCAGGAAGCTCTAATAGCTTCCTCAGGAATTCCCGTTTGAGGATAAATCCTTCAAACCAACAGGATTCCATTCCTTATGTTGCATTGTCAAATGGCAGTGTAACTAGGCATTCTGCAATCCCTTCATCTCTGACACAAAGTTTTCATCCTGTTGGTAATTCTCTGGATTTGAGGGCAGCACCATCTGGAGATGATCTGGTTCCTCAAAGCCAGCCCCTCGGAATTAGTTCTTCTTTACACAGGAATATGCCATCATTTAGATGGAGTGGCAGCTCTAACTCAAGAAACAGCCATTTGTCAAACTCAATGATCAGGTCAGACAGGGATAATCTACTACACGAAGAAGCAAGCTCAAGAAGCATGTCTGGAAGCATATTTGAACATCCAATGTCTGTGCCAGTGGCTGATTTAAGAAATTCAGCTCGAAATCCAACCAACAGAGCTTCAAGTAGTGCAAATTTAAATATACCAGGAAATGTTGCTTCCTCACTGCATACCAGGTCAAGTTCAGCTATCAATTCACTATCTGCTCCGTCCTGGCTTTCTCGTCCCAATCCTGTACATCATCCACGGAGGTTATCTGATTATGTTCGTAGATCATTGTTGTCTACTGGTTCTGAGGCTGCTGGAAGTTTCAGCAATAGCAATTTTTTCTTGCACTCTGCTCCTGTTGCTTCATCTGAAGCAAGAGCCCCATCATCTCGAGCTGGTAGTCAAGGACGTCATCAGTCACACTCAAGATCATCATGGGTGGAGAGGCGAGGTGATATTAACTTCAGACTTCCCTATTCATTGCAAACTCTGGCTGTTGCCAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAGTGTTTTGGGCCTCATGCGTAGGGGAGGGAGCCTTCGGTTTGAGGATTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCATGACCGGCACAGGGACATGCGACTTGATGTCGATAACATGTCTTACGAGGAGTTACTGGCTCTGGAAGAAAGGATTGGAAATGTGAGTACCGGATTGAGCGAGGAAACTATATTGAAACTACTGAAACAGAGGAAGTATTCAGTTGAAGGAGGGTGTCAATGTGAGGCAGAACCCTGCTGTGTGTGTCAGGAAGAGTTTGACAATGGAGATGACGTTGGAAAGCTTGACTGTGGCCATGATTACCATACCAACTGCATCAAACAGTGGCTAATGCAGAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGTCAGCGTGA 2118 0.4386 MQGTRGRIGSLPETLEFDCGSTSSNATVDQQVFWDSMTNPVENQVPQFMLSPGDMNPLYANSINHEWKSMNNWRMGEPSSSGSHIAIDNDEQKREYGWSSSTSVDAVDGSRLERHFESTNLVSLDNVNTSPMCMNNSNPHSVTQNINLNASSADTGHNMGQHLEHPGLNKASGSVNEPIPPIVGPALFSHPSGSNLVDNSNGRALDARRASCKRKTVEGYVGQSSGGESSSCSQYIESSAWRTRPTQSNSRSSLSRSALSAQISSRHGPDVGNESPESFNNLNVAGSSNSFLRNSRLRINPSNQQDSIPYVALSNGSVTRHSAIPSSLTQSFHPVGNSLDLRAAPSGDDLVPQSQPLGISSSLHRNMPSFRWSGSSNSRNSHLSNSMIRSDRDNLLHEEASSRSMSGSIFEHPMSVPVADLRNSARNPTNRASSSANLNIPGNVASSLHTRSSSAINSLSAPSWLSRPNPVHHPRRLSDYVRRSLLSTGSEAAGSFSNSNFFLHSAPVASSEARAPSSRAGSQGRHQSHSRSSWVERRGDINFRLPYSLQTLAVASEGSSRLVSELRSVLGLMRRGGSLRFEDFMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQRKYSVEGGCQCEAEPCCVCQEEFDNGDDVGKLDCGHDYHTNCIKQWLMQKNLCPICKTTGLSA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1824g00005 705 MobiDBLite consensus disorder prediction 211 282 - -
Pral1824g00005 705 MobiDBLite consensus disorder prediction 353 390 - -
Pral1824g00005 705 SUPERFAMILY RING/U-box 657 701 - -
Pral1824g00005 705 SMART ring_2 658 698 IPR001841 -
Pral1824g00005 705 MobiDBLite consensus disorder prediction 512 533 - -
Pral1824g00005 705 MobiDBLite consensus disorder prediction 150 177 - -
Pral1824g00005 705 MobiDBLite consensus disorder prediction 512 529 - -
Pral1824g00005 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 702 IPR013083 -
Pral1824g00005 705 MobiDBLite consensus disorder prediction 339 391 - -
Pral1824g00005 705 FunFam E3 ubiquitin-protein ligase MBR2 626 703 - -
Pral1824g00005 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 208 704 IPR045191 GO:0061630
Pral1824g00005 705 Pfam Ring finger domain 658 699 IPR001841 -
Pral1824g00005 705 ProSiteProfiles Zinc finger RING-type profile. 658 699 IPR001841 -
Pral1824g00005 705 MobiDBLite consensus disorder prediction 222 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1824g00005 Pral-Chr1824 30969 36379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1824g00005 210 703 C3H Transcription Factor Family AT2G15530 35.893 6.17e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1824g00005 - - pcin:129295490 1051.58