Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1822g00003 ATGTTCGTCATTAACATGCCTTCCCACAAAATTATGTTACTCTTTTTCTTTATTAGCTTTCTCCATTCTGCTACTACTCAAGCACAACCCGTCTATACTAACAGCAGCTGTTCTGGCCGCGCCTTCGCTGCCAATAGTTCCTTCCAATCCGACCTCACCAACCTGCTCTCTTCCTTAGCTTCCAACAAAACCGCCAACAACGATTTCTACAACACCACCGTGCACCGCGGTCGCAACACCATATACGGCCTCTTCATGTGCCGGGGTGACGTCACCCTCGAGTTGTGCCACCAGTGCGTCGTTGACGCAACGAAAAATATACGCTCCCAGTGTAACGTCTCCAGGGAGGCCGTGATATGGTACGAGGAGTGTATGGTTCGCTATTCCGACCGCTACTTCTTTTCCTCCGTCAACACCAGTGCTGGCAGCTGCGGGGCCAACACCAACAACGTGGCCAACAACCAAACAGGATTCATGAATTTATTGTCGACAACTATGAACAAGGCGGCCGACGAGGCGGCCAAATCTGGTATGGGGAAGAAGAACTTTGCGACAGAAGAAGCGAGTTTACAGTTTCAAACTATGTATTGTCTGGTTCAGTGCACGCCGGACCTTTCTCCCCAAGGTTGCAGAACATGTCTGAGAGACGCGATTGGGGACCTTTTCAACTGTAGTTTCAACAAGATAGGAGGAAGAGTTTTATATCCCAGTTGTAACGTTCGCTATGAATTGTTCATCTTCTATAATTCTAACATGAAAGTGTCTGATGTTTATACAGGAAAAGCAAAGACCATTGTGATAGTTGTGGTTTCTGTTGGTGGTGGGGGGATACTTTTTTCTTTGGTGTACTATCTCTTAAGGAGTTTAATAAGGAAGAGACGGAGGGCTGAACTCAGACAAAAATACTTTGGAGATGAAAGCAACACTTTAGAGCCTCTGCAATTCAGTTTGGCCACTATTGAAGCCGCAACAAATAAGTTTTCACAGGAAAATTGTTTAGGCCAAGGTGGATTTGGACAGGTTTACAAGGGTATTCTTTCAAATGGTCAAGAAATAGCTGTAAAGAGACTTTCAAAAGGTTCAGGCCAAGGGGCAGCAGAATTTAAAAATGAAGTATTATTAATAGCCAGACTGCAGCACAGAAATTTGGTGACCTTGCTGGGATTTTGCATAGAAGATCAAGAGAAAATTCTCATTTATGAATATGTTCCCAATAAAAGCCTTGACTACATCCTATTTGGTTCCCAGGAAAATAGAAGACTAACTTGGGAGGAGCGTTATGAAATCATAAGAGGAGTTGCTCGAGGAATTCTATATCTTCATGAATATTCTCGTCTTAAAATTATACATCGTGATCTTAAACCTAGCAATATTTTGTTAGACAATGAAATGAATCCAAAAATTTCAGATTTTGGTCTCGCTAGGATGGTTGCTATCAATGAAAATGAAGGAAATACAAGGAGAATTGTCGGAACATATGGTTATATGCCTCCAGAATATGCGATGTTCGGGCTATATTCTGAAAAATCAGATGTTTTTAGTTTTGGAGTTATAATTTTAGAAATTATCAGTGGAAAGAAGAATGCAAGTTGTCATGATGAATCGCAGTATGCTGATAGCCTCTTAAGCTATACGTGGAATCAATGGAGTAATGAAAAGTTGTTCGAGATGTTGGATTCAAATCTAAAAGAAATGGAATCTTATAATGAAGTGAGCCGGTGCATCCAAATTGGATTGTTGTGTGTTCAAAGGCATCCAGATTCAAGACCTTCCATGGCTACAGTTGTTTCATATCTGAGCAATGATTCAATTCAGTTGCCACATCCACAGCAACCTGCTTTCTTTTTGCGCGCTCGAAGGGTACTTACTTCTGCAAGTAGAGAATATAGCTCCATTAATGAAATGTCTATGAGTGATTTCTTTCCTCGCTAG 1932 0.4167 MFVINMPSHKIMLLFFFISFLHSATTQAQPVYTNSSCSGRAFAANSSFQSDLTNLLSSLASNKTANNDFYNTTVHRGRNTIYGLFMCRGDVTLELCHQCVVDATKNIRSQCNVSREAVIWYEECMVRYSDRYFFSSVNTSAGSCGANTNNVANNQTGFMNLLSTTMNKAADEAAKSGMGKKNFATEEASLQFQTMYCLVQCTPDLSPQGCRTCLRDAIGDLFNCSFNKIGGRVLYPSCNVRYELFIFYNSNMKVSDVYTGKAKTIVIVVVSVGGGGILFSLVYYLLRSLIRKRRRAELRQKYFGDESNTLEPLQFSLATIEAATNKFSQENCLGQGGFGQVYKGILSNGQEIAVKRLSKGSGQGAAEFKNEVLLIARLQHRNLVTLLGFCIEDQEKILIYEYVPNKSLDYILFGSQENRRLTWEERYEIIRGVARGILYLHEYSRLKIIHRDLKPSNILLDNEMNPKISDFGLARMVAINENEGNTRRIVGTYGYMPPEYAMFGLYSEKSDVFSFGVIILEIISGKKNASCHDESQYADSLLSYTWNQWSNEKLFEMLDSNLKEMESYNEVSRCIQIGLLCVQRHPDSRPSMATVVSYLSNDSIQLPHPQQPAFFLRARRVLTSASREYSSINEMSMSDFFPR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1822g00003 643 Pfam Protein tyrosine and serine/threonine kinase 330 599 IPR001245 GO:0004672|GO:0006468
Pral1822g00003 643 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 637 - -
Pral1822g00003 643 FunFam Cysteine-rich receptor-like protein kinase 25 142 247 - -
Pral1822g00003 643 Gene3D Phosphorylase Kinase; domain 1 288 402 - -
Pral1822g00003 643 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 30 132 - -
Pral1822g00003 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Pral1822g00003 643 Gene3D Transferase(Phosphotransferase) domain 1 403 608 - -
Pral1822g00003 643 SMART serkin_6 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1822g00003 643 Gene3D - 29 133 IPR038408 -
Pral1822g00003 643 Gene3D - 139 247 IPR038408 -
Pral1822g00003 643 FunFam cysteine-rich receptor-like protein kinase 10 403 606 - -
Pral1822g00003 643 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 291 402 - -
Pral1822g00003 643 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Pral1822g00003 643 SUPERFAMILY Protein kinase-like (PK-like) 310 634 IPR011009 -
Pral1822g00003 643 ProSiteProfiles Protein kinase domain profile. 327 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1822g00003 643 CDD STKc_IRAK 333 599 - -
Pral1822g00003 643 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Pral1822g00003 643 Pfam Salt stress response/antifungal 144 243 IPR002902 -
Pral1822g00003 643 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Pral1822g00003 643 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1822g00003 Pral-Chr1822 16853 31915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1822g00003 14 620 Receptor kinase-like Gene Family AT4G05200 44.146 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral1822g00003 PK_Tyr_Ser-Thr 8.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1822g00003 - - pcin:129286093 1003.05