Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1820g00004 ATGGATATGGATATGGATGCTTCAGAAATCAGAGGACGAAGCTGCAAGCTCCAAAACGACGACGAATTGGACCTCCGCAGAGGCCCTTGGACCGTCGACGAAGACCTCACCCTCATCAATTACATTGCCACTCACGGCGAAGGTCGGTGGAACTCCCTCGCTCGATCCGCCGGCCTCAAACGAACTGGTAAGAGCTGCAGATTGAGGTGGCTCAACTATCTCCGGCCCGATGTCCGACGTGGAAACATCACCCTCGAAGAACAGTTCCTGATTCTCGATCTTCATTCTCGCTGGGGAAACAGATGGTCGAAAATTGCCCAGTATTTGCCGGGAAGGACTGACAACGAGATCAAGAACTACTGGAGAACACGAGTTCAAAAGCACGCCAAGCAGCTGAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGTTTCCTCTGGATGCCCAGGCTCGTCGAGCGTATTCAAGCTTCCGCCGCCGCCGCCGCCGTCTCCGTTTCTCCGCCAGTATCTACCATCACCACCAACACTCCTCCCAACGCCGCATACAATTACAACAATTTCGAGTTTGGGGGAGCCTCTCAGGTCACCGGAAGTAACTACACGACAGAGAACAGCAGCGCGGCGGCTTCGTCAGAGTCGTTCGGGTCGACTCAGGTGTCGCCGATCTCGGACTTGACGGAGTATTACTACGGTGGAGTTCCGGTCGGTAATAAGTGTAACCCTAATCCGGATTACTGCCAAACCGGGGATTTAAGTTACTCGGATGGCATCACCAACTTGGATATGCAAGCCGTGGAGGCAAACAACAGCAACCACCAGTATTGGGCTCAGAGCGGTGGAGGGGACACGTCGGACAATTTCTGGAATGTTGAAAACATGCTGTTTTTACAGCAACAGCTCAGTGACAATATGTAA 924 0.5271 MDMDMDASEIRGRSCKLQNDDELDLRRGPWTVDEDLTLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQFLILDLHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRFLWMPRLVERIQASAAAAAVSVSPPVSTITTNTPPNAAYNYNNFEFGGASQVTGSNYTTENSSAAASSESFGSTQVSPISDLTEYYYGGVPVGNKCNPNPDYCQTGDLSYSDGITNLDMQAVEANNSNHQYWAQSGGGDTSDNFWNVENMLFLQQQLSDNM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1820g00004 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Pral1820g00004 307 CDD SANT 84 123 IPR001005 -
Pral1820g00004 307 Gene3D - 24 80 - -
Pral1820g00004 307 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Pral1820g00004 307 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 23 227 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral1820g00004 307 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Pral1820g00004 307 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Pral1820g00004 307 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Pral1820g00004 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 78 IPR017930 -
Pral1820g00004 307 FunFam Myb transcription factor 27 79 - -
Pral1820g00004 307 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Pral1820g00004 307 SMART sant 26 76 IPR001005 -
Pral1820g00004 307 SMART sant 79 127 IPR001005 -
Pral1820g00004 307 Gene3D - 83 146 - -
Pral1820g00004 307 FunFam MYB transcription factor 84 147 - -
Pral1820g00004 307 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1820g00004 Pral-Chr1820 22595 24271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1820g00004 11 293 MYB Transcription Factor Family AT3G06490 53.968 1.23e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1820g00004 Myb_DNA-binding 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1820g00004 K09422 - tcc:18603713 364.77