Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1817g00002 ATGGCAAACAACTTAACGGGGCAACTTGTTTGTTCAGAGATACATGGATTCCATACATTGCAAGAGCTGGATGTTAGGAACACTATGGAGGAAGCAAAAAGCAGATGGCTTCGCCCTAATGAGATTCATGCTATACTTAGTAATTACAAGTATTTCACCATCCATGTAAAGCCAGTGCATTTGCCTCCAAGTGGTACTATTGTTTTATTTGACCGCAAGATGCTTAGGAACTTTCGGAAAGATGGATACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTGAAGGAAGCTCATGAACACTTAAAAGTTGGTAACGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGATAACCCAAGTTTTGTGCGTAGATGTTATTGGCTTCTTGACAAGAGTCTGGAGCACATAGTTCTTGTTCATTATCGTGAAACACAAGAATTGCAGGGCTCTCCAGCTACACCTGTAAATTCAAACTCTAGTTCGGTTTCTGATCCTACTGCACCATTGATTTTATCAGAAGAATTGGATTCTGGGACCAACAATCCATATGCTGGTGGAGTTAATGACAATTTGAAGCTCAAGAGTCATGAACTGAGGCTTCTTGAGCTCAACACACTTGAATGGGATGATCTAGTGGTTACAAATGACCTCAACAATTCTACCACATCTGCTGGAGCTAAGGTTCAATATTTCGATCAACAAAGTCAGTCTTTGCTGAACGGCAATTTGAGCAATGTAACTAGCAGTCTGTCTGCCGAAATCCCTTCTTTCGATAACATAACACAACCTGTTACTGGGAGCAACGGTGCACCTTATGGTTTCCCAGAAACTGTAAATCCTCAGACAACAGAAAATCTAGCAAATCTGAATGCACAAAAGGGATATCCTGTCTCTGCGGGTGGTGTTGATTCCTTGGACACTTTGGTCAGTGATAGTTTGCAGAGTCAGGACAGCTTTGGAAGGTGGATCAACCACATGATTTCCGATTCACAATGTCCTGTGGATGAGTCAGCTCTTGTATCGCCCGTTATATCTATTCAAGAATCATATTCTTCTCTGGCAGAGGATCATCAGCAACCTTGTCTGCCCGAACAGCTTTTTAACATCACTGATGTCTCACCTGCATGGGCATCTTCCACTGAGAAGACCAAGATCCTGGTCACTGGAGTCTTTCATGATAACTATCTACACCTTGCAAAGTCCAACCTATTTTGTGTCTGCGGCGACATAAGTGTTCAAGCTGATATTGTTCAACTTGGGGTCTACCGATGCTGGGTATCATCACATTCCCCGGGATTCGTTAATCTTTATATGAGCCTTGATGGTCATAAGCCCGTAAGCCAAGTTGTCAATTTTGAGTATCGTACTCCAATTTTGCATGACGCTACAGCCTCTATGGAAGAGAGGTACAACTGGGCTGAGTTTCGACTTCAGATGAGGCTTGCTTGTTTGCTCTTTGGTACTCATAAGAGTCTTGATATTATCTCTAGTAAAGTACGGCCTAATGCAATAAAGGAGGCTAGGAACTTTGCTTCAAAGACCTCATTGGTTTCCAAAAGTTGGCAATACTTGGTTAAGTCAACTGAAGACAACAAAACTCCATTTCCTCAAGCAAAAGATGCACTGTTTGAAACGTCCTTGAAAAACGGATTAAAGGATTGGCTATTAGAAAGGATTCTATTGGGCCGTAAGACTACTGAATATGATTCGCAAGGTCAAGGTGTAATCCATTTGTGCGCAATTCTGGGATATACTTGGGCTGTTTCGTTGTTTTCAGGATCGGGCTTATCACTGGATTTTCGTGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGTGCTGTTGTCTGCTGGGGCAAAGCCAAACTTAGTCACAGATCCTACTCCAAAAATTCCTGGTGGATGTACTGCTGCTGATCTTGCTTTTATGGAGGGTTATGAAGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATTAGTGGCCGACTGGAAACAAGCACAAATGATCCAGTAGATTATGAACATCTCACTGAGGACCAACTATACCTAAAGGATACGTTGGCAGCTTACCGAACAAGTGCTGAGGCGGCAGCACGAATACAGGCTGCCTTTAGGGAGCACTCACTAAAAGTACGAGTAAAGGCAGTTCAAGGTTTAAATCCAGAGGATGAGGCCCGTATGATTGTTGCAGCAATGAAGATTCAACATGCCTATCGCAACTATAACACAAAGAGGATGATGGCTGCTGCAGCTCGCATCCAGTATAGGTTCCGTGCATGGAAATTGCGTAAAGAATTTCTCAACATGCGACATCAGGCTATCAAAATCCAAGCTGCTTTCCGGGGCTACCAAGAGAGGAAGCAGTATCGAAAAATTCTCTGGTCTGTTGGAGTACTTGAAAAAGCAGTCCTGCGATGGCGATTGAAGAGAAAAGGCTTCCGTGGACTTCAGGTTAATCCTGTCCAACAAGAGCAAGAACCGAGGCAGGAAAGTGACACAGAGGAGGACTTCTTCAGGACTAGTCGGAAACAAGCTGAAGAACGTGTGGAGAGGTCTGTAGTACGTGTTCAGTCCATGTTCCGTTCAAAGAAAGCACAAGAAGAGTATAGGAGGATGAAGCTGGCTCACAGTCAGGCAAAGCTGGAACTTGAATATCAAGAGCTGCTCAATTCAGAGGTTGATATTCTATAG 2760 0.4312 MANNLTGQLVCSEIHGFHTLQELDVRNTMEEAKSRWLRPNEIHAILSNYKYFTIHVKPVHLPPSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPSFVRRCYWLLDKSLEHIVLVHYRETQELQGSPATPVNSNSSSVSDPTAPLILSEELDSGTNNPYAGGVNDNLKLKSHELRLLELNTLEWDDLVVTNDLNNSTTSAGAKVQYFDQQSQSLLNGNLSNVTSSLSAEIPSFDNITQPVTGSNGAPYGFPETVNPQTTENLANLNAQKGYPVSAGGVDSLDTLVSDSLQSQDSFGRWINHMISDSQCPVDESALVSPVISIQESYSSLAEDHQQPCLPEQLFNITDVSPAWASSTEKTKILVTGVFHDNYLHLAKSNLFCVCGDISVQADIVQLGVYRCWVSSHSPGFVNLYMSLDGHKPVSQVVNFEYRTPILHDATASMEERYNWAEFRLQMRLACLLFGTHKSLDIISSKVRPNAIKEARNFASKTSLVSKSWQYLVKSTEDNKTPFPQAKDALFETSLKNGLKDWLLERILLGRKTTEYDSQGQGVIHLCAILGYTWAVSLFSGSGLSLDFRDKFGWTALHWAAYCGREKMVAVLLSAGAKPNLVTDPTPKIPGGCTAADLAFMEGYEGLAAYLSEKSLVEQFNDMSLAGNISGRLETSTNDPVDYEHLTEDQLYLKDTLAAYRTSAEAAARIQAAFREHSLKVRVKAVQGLNPEDEARMIVAAMKIQHAYRNYNTKRMMAAAARIQYRFRAWKLRKEFLNMRHQAIKIQAAFRGYQERKQYRKILWSVGVLEKAVLRWRLKRKGFRGLQVNPVQQEQEPRQESDTEEDFFRTSRKQAEERVERSVVRVQSMFRSKKAQEEYRRMKLAHSQAKLELEYQELLNSEVDIL 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1817g00002 919 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Pral1817g00002 919 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Pral1817g00002 919 FunFam calmodulin-binding transcription activator 5 535 675 - -
Pral1817g00002 919 SMART CG_1_2 29 146 IPR005559 GO:0003677
Pral1817g00002 919 SUPERFAMILY Ankyrin repeat 549 667 IPR036770 -
Pral1817g00002 919 Coils Coil 885 905 - -
Pral1817g00002 919 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Pral1817g00002 919 Pfam Ankyrin repeats (3 copies) 559 634 IPR002110 GO:0005515
Pral1817g00002 919 FunFam Calmodulin-binding transcription activator 5 364 460 - -
Pral1817g00002 919 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Pral1817g00002 919 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 901 - -
Pral1817g00002 919 SMART iq_5 715 737 IPR000048 GO:0005515
Pral1817g00002 919 SMART iq_5 791 813 IPR000048 GO:0005515
Pral1817g00002 919 SMART iq_5 768 790 IPR000048 GO:0005515
Pral1817g00002 919 SMART iq_5 871 893 IPR000048 GO:0005515
Pral1817g00002 919 Pfam IQ calmodulin-binding motif 796 813 IPR000048 GO:0005515
Pral1817g00002 919 Pfam IQ calmodulin-binding motif 771 789 IPR000048 GO:0005515
Pral1817g00002 919 Gene3D Immunoglobulins 364 459 IPR013783 -
Pral1817g00002 919 Gene3D - 537 674 IPR036770 -
Pral1817g00002 919 SMART ANK_2a 644 675 IPR002110 GO:0005515
Pral1817g00002 919 SMART ANK_2a 605 634 IPR002110 GO:0005515
Pral1817g00002 919 MobiDBLite consensus disorder prediction 148 167 - -
Pral1817g00002 919 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Pral1817g00002 919 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Pral1817g00002 919 ProSiteProfiles IQ motif profile. 792 816 IPR000048 GO:0005515
Pral1817g00002 919 ProSiteProfiles IQ motif profile. 716 745 IPR000048 GO:0005515
Pral1817g00002 919 SUPERFAMILY E set domains 369 456 IPR014756 -
Pral1817g00002 919 Gene3D - 766 816 - -
Pral1817g00002 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 819 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1817g00002 Pral-Chr1817 228 11433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1817g00002 29 905 CAMTA Transcription Factor Family AT3G16940 56.591 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pral1817g00002 CG-1 9.6e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1817g00002 K21596 - gmx:100793970 1354.73