Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1817g00001 ATGGCAAACAACTTAACGGGGCAACTTGTTTGTTCAGAGATACATGGATTCCATACATTGCAAGAGCTGGATGTTAGGAACACTATGGAGGAAGCAAAAAGCAGATGGCTTCGCCCTAATGAGATTCATGCTATACTTAGTAATTACAAGTATTTCACCATCCATGTAAAGCCAGTGCATTTGCCTCCAAGTGGTACTATTGTTTTATTTGACCGCAAGATGCTTAGGAACTTTCGGAAAGATGGATACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTGAAGGAAGCTCATGAACACTTAAAAGTTGGTAACGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGATAACCCAAGTTTTGTGCGTAGATGTTATTGGCTTCTTGACAAGAGTCTGGAGCACATAGTTCTTGTTCATTATCGTGAAACACAAGAATTGCAGGGCTCTCCAGCTACACCTGTAAATTCAAACTCTAGTTCGGTTTCTGATCCTACTGCACCATTGATTTTATCAGAAGAATTGGATTCTGGGACCAACAATCCATATGCTGGTGCAGGAGTTAATGACAATTTGAAGCTCAAGAGTCATGAACTGAGGCTTCTTGAGCTCAACACACTTGAATGGGATGATCTAGTGGTTACAAATGACCTCAACAATTCTACCACATCTGCTGGAGCTAAGGTTCAATATTTCGATCAACAAAGTCAGTCTTTGCTGAACGGCAATTTGAGCAATGTAACTAGCAGTCTGTCTGCCGAAATCCCTTCTTTCGATAACATAACACAACCTGTTACTGGGAGCAACGGTGCACCTTATGGTTTCCCAGAAACTGTAAATCCTCAGACAACAGAAAATCTAGCAAATCTGAATGCACAAAAGGGATATCCTGTCTCTGCGGGTGGTGTTGATTCCTTGGACACTTTGGTCAGTGATAGTTTGCAGAGTCAGGACAGCTTTGGAAGGTGGATCAACCACATGATTTCCGATTCACAATGTCCTGTGGATGAGTCAGCTCTTGTATCGCCCGTTATATCTATTCAAGAATCATATTCTTCTCTGGCAGAGGATCATCAGCAACCTTGTCTGCCCGAACAGCTTTTTAACATCACTGATGTCTCACCTGCATGGGCATCTTCCACTGAGAAGACCAAGATCCTGGTCACTGGAGTCTTTCATGATAACTATCTACACCTTGCAAAGTCCAACCTATTTTGTGTCTGCGGCGACATAAGTGTTCAAGCTGATATTGTTCAACTTGGGGTCTACCGATGCTGGGTATCATCACATTCCCCGGGATTCGTTAATCTTTATATGAGCCTTGATGGTCATAAGCCCGTAAGCCAAGTTGTCAATTTTGAGTATCGTACTCCAATTTTGCATGACGCTACAGCCTCTATGGAAGAGAGGTACAACTGGGCTGAGTTTCGACTTCAGATGAGGCTTGCTTGTTTGCTCTTTGGTACTCATAAGAGTCTTGATATTATCTCTAGTAAAGTACGGCCTAATGCAATAAAGGAGGCTAGGAACTTTGCTTCAAAGACCTCATTGGTTTCCAAAAGTTGGCAATACTTGGTTAAGTCAACTGAAGACAACAAAACTCCATTTCCTCAAGCAAAAGATGCACTGTTTGAAACGTCCTTGAAAAACGGATTAAAGGATTGGCTATTAGAAAGGATTCTATTGGGCCGTAAGACTACTGAATATGATTCGCAAGGTCAAGGTGTAATCCATTTGTGCGCAATTCTGGGATATACTTGGGCTGTTTCGTTGTTTTCAGGATCGGGCTTATCACTGGATTTTCGTGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGTGCTGTTGTCTGCTGGGGCAAAGCCAAACTTAGTCACAGATCCTACTCCAAAAATTCCTGGTGGATGTACTGCTGCTGATCTTGCTTTTATGGAGGGTTATGAAGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATTAGTGGCCGACTGGAAACAAGCACAAATGATCCAGTAGATTATGAACATCTCACTGAGGACCAACTATACCTAAAGGATACGTTGGCAGCTTACCGAACAAGTGCTGAGGCGGCAGCACGAATACAGGCTGCCTTTAGGGAGCACTCACTAAAAGTACGAGTAAAGGCAGTTCAAGGTTTAAATCCAGAGGATGAGGCCCGTATGATTGTTGCAGCAATGAAGATTCAACATGCCTATCGCAACTATAACACAAAGAGGATGATGGCTGCTGCAGCTCGCATCCAGTATAGGTTCCGTGCATGGAAATTGCGTAAAGAATTTCTCAACATGCGACATCAGGCTATCAAAATCCAAGCTGCTTTCCGGGGCTACCAAGAGAGGAAGCAGTATCGAAAAATTCTCTGGTCTGTTGGAGTACTTGAAAAAGCAGTCCTGCGATGGCGATTGAAGAGAAAAGGCTTCCGTGGACTTCAGGTTAATCCTGTCCAACAAGAGCAAGAACCGAGGCAGGAAAGTGACACAGAGGAGGACTTCTTCAGGACTAGTCGGAAACAAGCTGAAGAACGTGTGGAGAGGTCTGTAGTACGTGTTCAGTCCATGTTCCGTTCAAAGAAAGCACAAGAAGAGTATAGGAGGATGAAGCTGGCTCACAGTCAGGCAAAGCTGGAACTTGAATATCAAGAGCTGCTCAATTCAGAGGTTGATATTCTATAG 2763 0.4314 MANNLTGQLVCSEIHGFHTLQELDVRNTMEEAKSRWLRPNEIHAILSNYKYFTIHVKPVHLPPSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPSFVRRCYWLLDKSLEHIVLVHYRETQELQGSPATPVNSNSSSVSDPTAPLILSEELDSGTNNPYAGAGVNDNLKLKSHELRLLELNTLEWDDLVVTNDLNNSTTSAGAKVQYFDQQSQSLLNGNLSNVTSSLSAEIPSFDNITQPVTGSNGAPYGFPETVNPQTTENLANLNAQKGYPVSAGGVDSLDTLVSDSLQSQDSFGRWINHMISDSQCPVDESALVSPVISIQESYSSLAEDHQQPCLPEQLFNITDVSPAWASSTEKTKILVTGVFHDNYLHLAKSNLFCVCGDISVQADIVQLGVYRCWVSSHSPGFVNLYMSLDGHKPVSQVVNFEYRTPILHDATASMEERYNWAEFRLQMRLACLLFGTHKSLDIISSKVRPNAIKEARNFASKTSLVSKSWQYLVKSTEDNKTPFPQAKDALFETSLKNGLKDWLLERILLGRKTTEYDSQGQGVIHLCAILGYTWAVSLFSGSGLSLDFRDKFGWTALHWAAYCGREKMVAVLLSAGAKPNLVTDPTPKIPGGCTAADLAFMEGYEGLAAYLSEKSLVEQFNDMSLAGNISGRLETSTNDPVDYEHLTEDQLYLKDTLAAYRTSAEAAARIQAAFREHSLKVRVKAVQGLNPEDEARMIVAAMKIQHAYRNYNTKRMMAAAARIQYRFRAWKLRKEFLNMRHQAIKIQAAFRGYQERKQYRKILWSVGVLEKAVLRWRLKRKGFRGLQVNPVQQEQEPRQESDTEEDFFRTSRKQAEERVERSVVRVQSMFRSKKAQEEYRRMKLAHSQAKLELEYQELLNSEVDIL 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1817g00001 920 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Pral1817g00001 920 SMART CG_1_2 29 146 IPR005559 GO:0003677
Pral1817g00001 920 SMART iq_5 716 738 IPR000048 GO:0005515
Pral1817g00001 920 SMART iq_5 792 814 IPR000048 GO:0005515
Pral1817g00001 920 SMART iq_5 769 791 IPR000048 GO:0005515
Pral1817g00001 920 SMART iq_5 872 894 IPR000048 GO:0005515
Pral1817g00001 920 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Pral1817g00001 920 ProSiteProfiles IQ motif profile. 793 817 IPR000048 GO:0005515
Pral1817g00001 920 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Pral1817g00001 920 Pfam IQ calmodulin-binding motif 797 814 IPR000048 GO:0005515
Pral1817g00001 920 Pfam IQ calmodulin-binding motif 772 790 IPR000048 GO:0005515
Pral1817g00001 920 Gene3D Immunoglobulins 365 460 IPR013783 -
Pral1817g00001 920 Gene3D - 538 675 IPR036770 -
Pral1817g00001 920 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Pral1817g00001 920 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 902 - -
Pral1817g00001 920 MobiDBLite consensus disorder prediction 148 167 - -
Pral1817g00001 920 Gene3D - 767 817 - -
Pral1817g00001 920 SUPERFAMILY Ankyrin repeat 550 668 IPR036770 -
Pral1817g00001 920 SMART ANK_2a 645 676 IPR002110 GO:0005515
Pral1817g00001 920 SMART ANK_2a 606 635 IPR002110 GO:0005515
Pral1817g00001 920 ProSiteProfiles IQ motif profile. 874 902 IPR000048 GO:0005515
Pral1817g00001 920 FunFam calmodulin-binding transcription activator 5 536 676 - -
Pral1817g00001 920 Pfam Ankyrin repeats (3 copies) 560 635 IPR002110 GO:0005515
Pral1817g00001 920 ProSiteProfiles IQ motif profile. 717 746 IPR000048 GO:0005515
Pral1817g00001 920 FunFam Calmodulin-binding transcription activator 5 365 461 - -
Pral1817g00001 920 SUPERFAMILY E set domains 370 457 IPR014756 -
Pral1817g00001 920 Coils Coil 886 906 - -
Pral1817g00001 920 ProSiteProfiles Ankyrin repeat region circular profile. 606 634 - -
Pral1817g00001 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 820 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1817g00001 Pral-Chr1817 228 11434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1817g00001 29 906 CAMTA Transcription Factor Family AT3G16940 56.527 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pral1817g00001 CG-1 9.6e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1817g00001 K21596 - gmx:100793970 1350.11