Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1813g00003 ATGGCTGAAAGATTAACGGAGCTAAAGCTCAACAACACAGCCGCGGCAGCCACTGTGGCCTCCGGCAGTGGCAGCGGCGGCGGCCAGTCTCCAAGGGGACGGTGTGTGGCGCCGTTTCTGTTGAAGACGTATGATTTGGTGGAAGAAGGCGGAGTAGCGGATCAAGGTGAAGAAGAAGAAAGGAAGAGACCATCAATAGTGTCATGGAACGAGGAAGGAGATGGTTTCGTAGTGTGGCGTCCTGCAGAATTCTCAGAGCTCATCTTGCCCAGATACTTCAAACACAATAACTTCTCCAGCTTCATCCGCCAATTAAACACCTATGGGTTCAAGAAAGTGTCATCAAAGAGATGGGAATTCAAGCAGGAGAAATTTCAGAGAGGTCACAAGAAGTTGCTGGCGGAGATAACAAGGAAGAAGTGCGAGCCAAGTGTTTTCCCTCCATACTTGAAATCTTGTTCCGAAGAAAATAATAATGCAGCCACAGATGAAGGAACCAATCATAATGATAGTGATAATAATAACAATAATGAATCATTGCTACAGCAGAACCAAGAGCTGAAGAAGCAGAACCAGCATTTACAATCACAAATTGCCCATTTCAAACAATTACAAAGCAGGTTGTTGCAATGTGTCTCCCAATATATGGGCACCCCACCAAAATTAAGTTACCACTCTCCTTGA 684 0.4547 MAERLTELKLNNTAAAATVASGSGSGGGQSPRGRCVAPFLLKTYDLVEEGGVADQGEEEERKRPSIVSWNEEGDGFVVWRPAEFSELILPRYFKHNNFSSFIRQLNTYGFKKVSSKRWEFKQEKFQRGHKKLLAEITRKKCEPSVFPPYLKSCSEENNNAATDEGTNHNDSDNNNNNESLLQQNQELKKQNQHLQSQIAHFKQLQSRLLQCVSQYMGTPPKLSYHSP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1813g00003 227 Coils Coil 177 204 - -
Pral1813g00003 227 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 217 IPR027725 -
Pral1813g00003 227 Pfam HSF-type DNA-binding 39 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1813g00003 227 MobiDBLite consensus disorder prediction 152 178 - -
Pral1813g00003 227 SUPERFAMILY "Winged helix" DNA-binding domain 36 139 IPR036390 -
Pral1813g00003 227 SMART hsfneu3 35 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1813g00003 227 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1813g00003 227 FunFam Heat stress transcription factor A-6b 32 140 - -
Pral1813g00003 227 Gene3D - 32 140 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1813g00003 Pral-Chr1813 8959 12528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1813g00003 28 227 HSF AT5G62020 35.874 3.49e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral1813g00003 HSF_DNA-bind 7.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1813g00003 K09419 - qsa:O6P43_031835 227.639