Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1810g00052 ATGGCGACTCACCTTCCTGACCATTTCAAGTGTCCGATTTCCCTAGAGATAATGTCAGACCCAGTTATCCTTTCCTCGGGTCACACCTTTGACCGTGCTTCCATCCAACGGTGGCTCGACGCCGGTCACCGGGTTTGTCCAATTAGCAAATTACCCCTCCCTGATCACCCTTCCCTCATCCCCAACCATGCTCTCAGAAGCTTGATTTCCAACTATGCTCTCATTTCGCCTCTAGAGCAGCAGCTGCCTCCTCAACCTGAAACCCTAATCTCCTTGCTTACTTCTCGGTCTTCTCCTTTGGAATCTAAAATTGAATTACTAGACCAACTCACCCGGCTTTCCAAGCGTGACTCGGTGTTTCGCCGGCGGTTGACTGAGTCAGGGATCGTGTCGGCAGTGCTGAACTGCGTTGACTCCCGTGATTCTCGTCTTCAGGAGAAAGCCCTCTCCATGCTATTGAATCTAAGTCTTGACGATCATAACAAAGTGGGCTTGGTGGCGGAAGGTGTGATAGTTCGAGTTGTGGCTGTTCTACTGGGTGGCTCACCGAATTGCCGAGCGATTGCGGCAACTATGCTGACCAGCTTGGCGGTCGTTGCAGTAAATAAAGCCACGATTGGTGCATACCCATGTGCTATTGAAGCTCTGGTTTCGCTTCTTCGGAATGGTAAAGGGAGGGAGATGAAGGAAGCTGCCACGGCGCTTTATGCAATCTGTTCTTTTACTGATAATCGAAGGAGAGCTGTAGAATGTGGGGCGGTTCCTATTTTGCTTGGAGCTGCTGATTCTGGGCTTGAGAGGGCTGTTGAAGTTCTAGGTATTCTGGCTAAGTGTAAGGAAGGTAGGGAAGAGATGGAAAGCTATCATGGATGCATTCAGATTCTGGCTCGGGTTTTGAGGAATGGAAGCTCGAGGGGAGTTCAATATGCACTGCTGGCATTGAACTCACTTTGTCGTACTAGTGAGAGAATGAGATTAGAGGCCGTAAAAGAAGGAATTTTGGAGATCGGTCTTGCATTGCTGGATGATGATAGCGAGAAAGTAAGGAGAAACTCGTCCAATCTGATTCAGGTTCTGCGTGGCAACCAGTGGACAGGTTGA 1101 0.4941 MATHLPDHFKCPISLEIMSDPVILSSGHTFDRASIQRWLDAGHRVCPISKLPLPDHPSLIPNHALRSLISNYALISPLEQQLPPQPETLISLLTSRSSPLESKIELLDQLTRLSKRDSVFRRRLTESGIVSAVLNCVDSRDSRLQEKALSMLLNLSLDDHNKVGLVAEGVIVRVVAVLLGGSPNCRAIAATMLTSLAVVAVNKATIGAYPCAIEALVSLLRNGKGREMKEAATALYAICSFTDNRRRAVECGAVPILLGAADSGLERAVEVLGILAKCKEGREEMESYHGCIQILARVLRNGSSRGVQYALLALNSLCRTSERMRLEAVKEGILEIGLALLDDDSEKVRRNSSNLIQVLRGNQWTG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1810g00052 366 PANTHER U BOX DOMAIN-CONTAINING 6 356 - -
Pral1810g00052 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Pral1810g00052 366 SUPERFAMILY ARM repeat 87 359 IPR016024 -
Pral1810g00052 366 SUPERFAMILY RING/U-box 4 73 - -
Pral1810g00052 366 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Pral1810g00052 366 Gene3D - 85 266 IPR011989 -
Pral1810g00052 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Pral1810g00052 366 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Pral1810g00052 366 SMART arm_5 241 277 IPR000225 GO:0005515
Pral1810g00052 366 SMART arm_5 320 361 IPR000225 GO:0005515
Pral1810g00052 366 SMART arm_5 202 240 IPR000225 GO:0005515
Pral1810g00052 366 SMART arm_5 278 319 IPR000225 GO:0005515
Pral1810g00052 366 SMART arm_5 117 157 IPR000225 GO:0005515
Pral1810g00052 366 SMART arm_5 158 198 IPR000225 GO:0005515
Pral1810g00052 366 CDD RING-Ubox_PUB 6 55 IPR045210 -
Pral1810g00052 366 Gene3D - 267 360 IPR011989 -
Pral1810g00052 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1810g00052 Pral-Chr1810 369467 370986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1810g00052 1 361 U-box Gene Family AT4G21350 61.789 1.48e-150 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1810g00052 - - pcin:129286672 557.37