Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1810g00039 ATGGAAATGGAACATTCATGTGAAGTATACCCCGCAGACGCCAGCACCATAATTTCTTCCGACAATTTCATCTCATCTTCTTCAAGCGAACAGTACTTTAAGATCGAGGTCGAATGCAAACGCTATCTTGTTTGGGATGGTATCGGTGTAGACCGTTTTACTAATTCCACTGAGTGTGGTTTCTCAAATATCAGAAAGCAAGACATAGAACGGTCGGTACATATGCTTTTGTCTTACTTTAATGTTCCTGAGAATGATCGACCTCGTAGTGCAGCAAAAATCTTGGCTTGTGCCCAACACATGGCGAATGTGACGCACAAGAACCACAGGATTATGGGTATGCGTGTTGTTATAACAAATACTACTCTAATTTATCAGTATGAATATCGTCTTCGTAGGATTTTGGAAGAATCAATGAATGATGAAGATGAAGTTCTGAGAGCCGACCCTGCGTGCAAGTCAGCCATTGAGGGGTTGGAAAGGGTGAAGGTAGAGCAAATAGAAGGGACCAGTGTGGGAAAATATGGTAACTGCACAATTTGCTTTGAAGATTTTGCAATTGATTCAGAAGTTCTTCGATTGCCATGCTCCCACTTATTTCATGGCAAATGCATCATTAATTGGTTACAAAATCGCAACACTTGCCCTCTGTGTCGTTTTCAAATGCCTACAGCTTATGATCAATGA 687 0.4119 MEMEHSCEVYPADASTIISSDNFISSSSSEQYFKIEVECKRYLVWDGIGVDRFTNSTECGFSNIRKQDIERSVHMLLSYFNVPENDRPRSAAKILACAQHMANVTHKNHRIMGMRVVITNTTLIYQYEYRLRRILEESMNDEDEVLRADPACKSAIEGLERVKVEQIEGTSVGKYGNCTICFEDFAIDSEVLRLPCSHLFHGKCIINWLQNRNTCPLCRFQMPTAYDQ 228
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral1810g00039 228 SMART ring_2 178 218 IPR001841 -
Pral1810g00039 228 FunFam E3 ubiquitin-protein ligase RNF181 139 225 - -
Pral1810g00039 228 SMART ringv_2 177 219 IPR011016 GO:0008270
Pral1810g00039 228 Pfam Ring finger domain 177 219 IPR001841 -
Pral1810g00039 228 SUPERFAMILY RING/U-box 177 224 - -
Pral1810g00039 228 CDD RING-H2_PA-TM-RING 178 219 - -
Pral1810g00039 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 223 - -
Pral1810g00039 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 225 IPR013083 -
Pral1810g00039 228 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral1810g00039 Pral-Chr1810 271744 272430 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1810g00039 129 224 C3H Transcription Factor Family AT3G02340 41.414 6.31e-19 82.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1810g00039 - - pcin:129295769 296.204