Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral1810g00038 | ATGGATCCTCAACACCCCACTGAAGGTGATTTGAACAATACCGCCGACAGATCTGCCGATAATCATGTCATCAACCCATCATCTTTAGGTGATGACTTGGTTAACATTTTCGATATGTTGGCTTCTTTTCCTATAACCGCCAATCAACTTGATATCCCCGACGATGGACATGTTGGTTTTGATGCATTAATGGAGGAATTGATGAGGAACCAAGAAAGAAACATTAGACAAGTCCATGATGATATTGGTAGGTTTGTGCAACAAATGACGACGACGGCCACCCAAAATGAAGATTTGACGATAACGAACGATGAAAATGAAAGTCAGAGATTGACCAATCCTGCAACTGAGTCATCCATTGAAGGATTGGAGAAGTTGATTGTTGAACAGAAAGAAGGAAGCTCAATGGCGAAGTGTGAGTGTCCTATTTGTTTTGAAGATTTCTCCAACGACAATGAAGCCACTCGTATGCCTTGCTCCCATTTGTTTCACACAAAATGCATCACTGGCTGGCTTCATACTCGCAATACTTGTCCTCTTTGTCGATTTCAAATGCCTACAGCTAATGACAATTGA | 576 | 0.4149 | MDPQHPTEGDLNNTADRSADNHVINPSSLGDDLVNIFDMLASFPITANQLDIPDDGHVGFDALMEELMRNQERNIRQVHDDIGRFVQQMTTTATQNEDLTITNDENESQRLTNPATESSIEGLEKLIVEQKEGSSMAKCECPICFEDFSNDNEATRMPCSHLFHTKCITGWLHTRNTCPLCRFQMPTANDN | 191 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral1810g00038 | 191 | FunFam | E3 ubiquitin-protein ligase RNF181 | 103 | 188 | - | - | |
| Pral1810g00038 | 191 | Pfam | Ring finger domain | 140 | 182 | IPR001841 | - | |
| Pral1810g00038 | 191 | SMART | ringv_2 | 140 | 182 | IPR011016 | GO:0008270 | |
| Pral1810g00038 | 191 | MobiDBLite | consensus disorder prediction | 7 | 23 | - | - | |
| Pral1810g00038 | 191 | SMART | ring_2 | 141 | 181 | IPR001841 | - | |
| Pral1810g00038 | 191 | CDD | RING-H2_PA-TM-RING | 140 | 182 | - | - | |
| Pral1810g00038 | 191 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 188 | IPR013083 | - | |
| Pral1810g00038 | 191 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 182 | IPR001841 | - | |
| Pral1810g00038 | 191 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Pral1810g00038 | 191 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 74 | 186 | - | - | |
| Pral1810g00038 | 191 | SUPERFAMILY | RING/U-box | 140 | 187 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral1810g00038 | Pral-Chr1810 | 265570 | 266145 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral1810g00038 | 108 | 187 | C3H Transcription Factor Family | AT5G01980 | 43.750 | 2.68e-18 | 80.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral1810g00038 | - | K22378 | pcin:129305393 | 153.295 |