Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1810g00025 ATGGCCACTGTGGGTTCTTCTTCCTCGTCAAAGGTCTGCTACAATTCCGAGTGTAAAGAATTGAAGTCAGACAGACCTAAGAAGGGTTGGAGACTCCGTACTGGAGACTTCGCTGAGCTCTGTGATCGATGCGGTTCTGCTTTTGAGGAAGGAAGGTTCTGTGACATTTATCATTCAAAAGCTTCTGGTTGGAGGACTTGTGAGACATGTGGGAAGGGGATTCACTGTGGGTGTATCGTTTCAAGTACAGCCTTTATGATGTTGGATCCTGGAGGCATTGAATGCATTGCATGTGCCAGGAAGAGTATTATTTTGCCTTGGTCACCACCTTTTTCTCTTCAAAGTCGTTTTAGAGACCTGTCTTCAAAAAATTGGAGTCAGTTAGCTGGATCTGGTCCTGTACCATGGAAGCAAGCTCCCAGTTTGTTCAATACAAATTCTTCATCTGACCGGCACCCGGATATGCCATCTGTAGTTGAAATATCTAGTGTTGACAATATTTATGGAAATGAGAGGATATCTGCCTCATCTCTGGAAAAGAAAAGTGACGATCTTTCTGGAATACCAGCTAATTGGAATGTAAAGATTGGCACACGGGAAATGATGTTTATAAATGGAATGCGGAATGATGAAAAGTCTAGTTCATGCTTGAATATGTGCCAGCAAACTTCTCTGAAGGAGGATTCATCAACCCAACCATTTGGTCTGACTGTACCTTATGCACATCAAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCACAACAAACTCCTCCACCTCCCCATGGAAAGCAATTTAGTGGCCCTGTACACGTTGCACTTGATTCATCAGGTGAATCACAGGCACGAAATGGACGGCCCAGAGGAGACGCCCGAGGAAGGAACCAGCTATTGCCCCGGTACTGGCCCCGGTGCACTGATCAGGAGCTACACCAGATATCTCTCGACTCTAATTCTGTTATAACTCCATTGTTCCAAAAAACGTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTACCAAAAAAATGTGCTGAGGCCTACTTTCCACAAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTTTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAAGGCGTAACTCCATGCATACAGTCCATGCAATTGCAAGCTGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGGAGGTTGGTCATGGGATTTCGAAAGGCTTCAAGTGCTACCCAATCTGATCAGGACAACGAAACAACCAAGACTGGAAATGGATATTCTACACACGGTGATGTTGAATTGGATCCTAGTTCATGGTCCAAAGTTGACAAATCAGGATATATAGCAAAAGAAGCACTGGGGAGCAAATCTTCCATTTCTAGGAAGAGAAAGAGTAACGCTTTGGGGTCAAAGAGTAAGCGACTAAGAATTGAAAATGAGGATCTAATAGAGTTGAACATTACATGGGAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAACCATGTTCCCAGCATTGTAGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGACGCTCCAGTGCTAGGGAAACCAACAATTTTCACTACCGACAGTGTTGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCAAAAATGGCGCAAATTGCCAGCTAATGCTCTTCTAACATCAAGATGGACATGTTCAGATAATCTATGGGACCCAGAAAGATCATGCTCAGCTGCACAGGAGTTGACAGCAGAACAGCTTGAAGATTTGCTTCCCCCTTGTAACTCAGTTGTATCCAAGAAAATGAAGACAGCCAAGCAGGATCCTGATAACGTTGACGCTTTGGAAGGACTTGACACCCTTGCTAACCTAGCTATCTTGGGAGAGGGGGAGGCTCTCCCAGCATCTTCCCAAGCCACAACAAAACACCCCCGGCATAGACCTGGCTGTTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGGCCCAAGCATAAGCAGACTTGCACATGTAATGTTTGCTTAACAGTGAAGCGCCGTTTCCGTACCTTGATGTTACGGCGTGAGAAGAAACAATCAGAGAGAGAAGCGGAGACAACACGTAAAAAGCAGCAGCCCCAGCCACCTCAGCCACCACCACCTATGTCGGACATATTGCTTGATGATGATTCACTGCCTTGCAGTAACACAGGAGATAGCAGTAGTCCTAATCAGAACAGGGAAGGCAATGAAGGTTCTGATGATGACCCTAACAAGACAAAGTCATCCGCCTCGCCGTTTAAAGGCCAGATTGACCTCAATATTCAGCCAGAGCGCGAGGAAGAGCTGTCTCCCAGTTCAGATTCTGGAAGTATGATTAAGTTGCTCCACAATGCTAATGAGAGGTATCTGAGGCAGCAGAGTATGGTGAACTCTTTTGCTGGAGATACTTCAGGTGGACAGTCACAGCAAGCTGGAGATGATGCGAGGGAAGAGAAACTCTGCAATGGTGTAGCCCTTGGCAGTAGTAATCATAATGCTGACAAGGAACATGCCCAAACATTGTCTATGAATGTGTGA 2622 0.4546 MATVGSSSSSKVCYNSECKELKSDRPKKGWRLRTGDFAELCDRCGSAFEEGRFCDIYHSKASGWRTCETCGKGIHCGCIVSSTAFMMLDPGGIECIACARKSIILPWSPPFSLQSRFRDLSSKNWSQLAGSGPVPWKQAPSLFNTNSSSDRHPDMPSVVEISSVDNIYGNERISASSLEKKSDDLSGIPANWNVKIGTREMMFINGMRNDEKSSSCLNMCQQTSLKEDSSTQPFGLTVPYAHQNERNGQIGVTGSHPQQTPPPPHGKQFSGPVHVALDSSGESQARNGRPRGDARGRNQLLPRYWPRCTDQELHQISLDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPQISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATQSDQDNETTKTGNGYSTHGDVELDPSSWSKVDKSGYIAKEALGSKSSISRKRKSNALGSKSKRLRIENEDLIELNITWEEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTDSVGEKIQWAQCEDCQKWRKLPANALLTSRWTCSDNLWDPERSCSAAQELTAEQLEDLLPPCNSVVSKKMKTAKQDPDNVDALEGLDTLANLAILGEGEALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQPQPPQPPPPMSDILLDDDSLPCSNTGDSSSPNQNREGNEGSDDDPNKTKSSASPFKGQIDLNIQPEREEELSPSSDSGSMIKLLHNANERYLRQQSMVNSFAGDTSGGQSQQAGDDAREEKLCNGVALGSSNHNADKEHAQTLSMNV 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1810g00025 873 CDD B3_DNA 326 427 IPR003340 GO:0003677
Pral1810g00025 873 ProSiteProfiles Zinc finger CW-type profile. 555 604 IPR011124 GO:0008270
Pral1810g00025 873 MobiDBLite consensus disorder prediction 426 459 - -
Pral1810g00025 873 MobiDBLite consensus disorder prediction 747 762 - -
Pral1810g00025 873 SMART B3_2 328 429 IPR003340 GO:0003677
Pral1810g00025 873 MobiDBLite consensus disorder prediction 707 805 - -
Pral1810g00025 873 MobiDBLite consensus disorder prediction 708 723 - -
Pral1810g00025 873 MobiDBLite consensus disorder prediction 427 455 - -
Pral1810g00025 873 FunFam B3 domain-containing transcription repressor VAL1 306 433 - -
Pral1810g00025 873 Pfam CW-type Zinc Finger 560 601 IPR011124 GO:0008270
Pral1810g00025 873 ProSiteProfiles B3 DNA-binding domain profile. 328 429 IPR003340 GO:0003677
Pral1810g00025 873 Gene3D - 559 611 - -
Pral1810g00025 873 Pfam B3 DNA binding domain 328 427 IPR003340 GO:0003677
Pral1810g00025 873 Gene3D - 306 433 IPR015300 -
Pral1810g00025 873 MobiDBLite consensus disorder prediction 247 275 - -
Pral1810g00025 873 SUPERFAMILY DNA-binding pseudobarrel domain 325 428 IPR015300 -
Pral1810g00025 873 MobiDBLite consensus disorder prediction 853 873 - -
Pral1810g00025 873 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1810g00025 Pral-Chr1810 148009 162517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1810g00025 9 712 B3 DNA Binding Superfamily AT4G32010 46.283 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral1810g00025 B3 5.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1810g00025 K09287 - gmx:100782114 1450.26