Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1810g00024 ATGGCCACTGTGGGTTCTTCTTCCTCGTCAAAGGTCTGCTACAATTCCGAGTGTAAAGAATTGAAGTCAGACAGACCTAAGAAGGGTTGGAGACTCCGTACTGGAGACTTCGCTGAGCTCTGTGATCGATGCGGTTCTGCTTTTGAGGAAGGAAGGTTCTGTGACATTTATCATTCAAAAGCTTCTGGTTGGAGGACTTGTGAGACATGTGGGAAGGGGATTCACTGTGGGTGTATCGTTTCAAGTACAGCCTTTATGATGTTGGATCCTGGAGGCATTGAATGCATTGCATGTGCCAGGAAGAGTATTATTTTGCCACCTAGTCTACCTTGGTCACCACCTTTTTCTCTTCAAAGTCGTTTTAGAGACCTGTCTTCAAAAAATTGGAGTCAGTTAGCTGGATCTGGTCCTGTACCATGGAAGCAAGCTCCCAGTTTGTTCAATACAAATTCTTCATCTGACCGGCACCCGGATATGCCATCTGTAGTTGAAATATCTAGTGTTGACAATATTTATGGAAATGAGAGGATATCTGCCTCATCTCTGGAAAAGAAAAGTGACGATCTTTCTGGAATACCAGCTAATTGGAATGTAAAGATTGGCACACGGGAAATGATGTTTATAAATGGAATGCGGAATGATGAAAAGTCTAGTTCATGCTTGAATATGTGCCAGCAAACTTCTCTGAAGGAGGATTCATCAACCCAACCATTTGGTCTGACTGTACCTTATGCACATCAAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCACAACAAACTCCTCCACCTCCCCATGGAAAGCAATTTAGTGGCCCTGTACACGTTGCACTTGATTCATCAGGTGAATCACAGGCACGAAATGGACGGCCCAGAGGAGACGCCCGAGGAAGGAACCAGCTATTGCCCCGGTACTGGCCCCGGTGCACTGATCAGGAGCTACACCAGATATCTCTCGACTCTAATTCTGTTATAACTCCATTGTTCCAAAAAACGTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTACCAAAAAAATGTGCTGAGGCCTACTTTCCACAAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTTTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAAGGCGTAACTCCATGCATACAGTCCATGCAATTGCAAGCTGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGGAGGTTGGTCATGGGATTTCGAAAGGCTTCAAGTGCTACCCAATCTGATCAGGACAACGAAACAACCAAGACTGGAAATGGATATTCTACACACGGTGATGTTGAATTGGATCCTAGTTCATGGTCCAAAGTTGACAAATCAGGATATATAGCAAAAGAAGCACTGGGGAGCAAATCTTCCATTTCTAGGAAGAGAAAGAGTAACGCTTTGGGGTCAAAGAGTAAGCGACTAAGAATTGAAAATGAGGATCTAATAGAGTTGAACATTACATGGGAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAACCATGTTCCCAGCATTGTAGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGACGCTCCAGTGCTAGGGAAACCAACAATTTTCACTACCGACAGTGTTGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCAAAAATGGCGCAAATTGCCAGCTAATGCTCTTCTAACATCAAGATGGACATGTTCAGATAATCTATGGGACCCAGAAAGATCATGCTCAGCTGCACAGGAGTTGACAGCAGAACAGCTTGAAGATTTGCTTCCCCCTTGTAACTCAGTTGTATCCAAGAAAATGAAGACAGCCAAGCAGGATCCTGATAACGTTGACGCTTTGGAAGGACTTGACACCCTTGCTAACCTAGCTATCTTGGGAGAGGGGGAGGCTCTCCCAGCATCTTCCCAAGCCACAACAAAACACCCCCGGCATAGACCTGGCTGTTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGGCCCAAGCATAAGCAGACTTGCACATGTAATGTTTGCTTAACAGTGAAGCGCCGTTTCCGTACCTTGATGTTACGGCGTGAGAAGAAACAATCAGAGAGAGAAGCGGAGACAACACGTAAAAAGCAGCAGCCCCAGCCACCTCAGCCACCACCACCTATGTCGGACATATTGCTTGATGATGATTCACTGCCTTGCAGTAACACAGGAGATAGCAGTAGTCCTAATCAGAACAGGGAAGGCAATGAAGGTTCTGATGATGACCCTAACAAGACAAAGTCATCCGCCTCGCCGTTTAAAGGCCAGATTGACCTCAATATTCAGCCAGAGCGCGAGGAAGAGCTGTCTCCCAGTTCAGATTCTGGAAGTATGATTAAGTTGCTCCACAATGCTAATGAGAGGTATCTGAGGCAGCAGAGTATGGTGAACTCTTTTGCTGGAGATACTTCAGGTGGACAGTCACAGCAAGCTGGAGATGATGCGAGGGAAGAGAAACTCTGCAATGGTGTAGCCCTTGGCAGTAGTAATCATAATGCTGACAAGGAACATGCCCAAACATTGTCTATGAATGTGTGA 2634 0.4548 MATVGSSSSSKVCYNSECKELKSDRPKKGWRLRTGDFAELCDRCGSAFEEGRFCDIYHSKASGWRTCETCGKGIHCGCIVSSTAFMMLDPGGIECIACARKSIILPPSLPWSPPFSLQSRFRDLSSKNWSQLAGSGPVPWKQAPSLFNTNSSSDRHPDMPSVVEISSVDNIYGNERISASSLEKKSDDLSGIPANWNVKIGTREMMFINGMRNDEKSSSCLNMCQQTSLKEDSSTQPFGLTVPYAHQNERNGQIGVTGSHPQQTPPPPHGKQFSGPVHVALDSSGESQARNGRPRGDARGRNQLLPRYWPRCTDQELHQISLDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPQISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATQSDQDNETTKTGNGYSTHGDVELDPSSWSKVDKSGYIAKEALGSKSSISRKRKSNALGSKSKRLRIENEDLIELNITWEEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTDSVGEKIQWAQCEDCQKWRKLPANALLTSRWTCSDNLWDPERSCSAAQELTAEQLEDLLPPCNSVVSKKMKTAKQDPDNVDALEGLDTLANLAILGEGEALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQPQPPQPPPPMSDILLDDDSLPCSNTGDSSSPNQNREGNEGSDDDPNKTKSSASPFKGQIDLNIQPEREEELSPSSDSGSMIKLLHNANERYLRQQSMVNSFAGDTSGGQSQQAGDDAREEKLCNGVALGSSNHNADKEHAQTLSMNV 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1810g00024 877 CDD B3_DNA 330 431 IPR003340 GO:0003677
Pral1810g00024 877 MobiDBLite consensus disorder prediction 751 766 - -
Pral1810g00024 877 MobiDBLite consensus disorder prediction 430 463 - -
Pral1810g00024 877 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 839 - -
Pral1810g00024 877 MobiDBLite consensus disorder prediction 431 459 - -
Pral1810g00024 877 MobiDBLite consensus disorder prediction 712 727 - -
Pral1810g00024 877 Pfam CW-type Zinc Finger 564 605 IPR011124 GO:0008270
Pral1810g00024 877 ProSiteProfiles Zinc finger CW-type profile. 559 608 IPR011124 GO:0008270
Pral1810g00024 877 MobiDBLite consensus disorder prediction 711 809 - -
Pral1810g00024 877 SMART B3_2 332 433 IPR003340 GO:0003677
Pral1810g00024 877 Gene3D - 310 437 IPR015300 -
Pral1810g00024 877 MobiDBLite consensus disorder prediction 251 279 - -
Pral1810g00024 877 Pfam B3 DNA binding domain 332 431 IPR003340 GO:0003677
Pral1810g00024 877 Gene3D - 563 615 - -
Pral1810g00024 877 FunFam B3 domain-containing transcription repressor VAL1 310 437 - -
Pral1810g00024 877 ProSiteProfiles B3 DNA-binding domain profile. 332 433 IPR003340 GO:0003677
Pral1810g00024 877 SUPERFAMILY DNA-binding pseudobarrel domain 329 432 IPR015300 -
Pral1810g00024 877 MobiDBLite consensus disorder prediction 857 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1810g00024 Pral-Chr1810 148009 162518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1810g00024 9 716 B3 DNA Binding Superfamily AT4G32010 46.025 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral1810g00024 B3 5.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1810g00024 K09287 - gmx:100782114 1449.11