Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1809g00006 ATGTCGCTCCGGCCGAATGCTAGAACTGAGGTTCGCCGCAACCGCTACAAGGTGGCGGTGGACGCCGATGAGGGCCGCCGAAGAAGAGAAGATAACATGGTCGAGATCCGTAAGAGCAAGCGCGAAGAGAGTCTGCAGAAGAAGCGTCGCGAAGGCCTGCAAGCTCAGCAGCAATTCGCCACTCCTATTCAGGCTTCAACTGTTGAGAAAAAGTTGGAGAGTCTTCCTTCCATGGTTGCTGGTGTTTGGTCGGATGACAGCAATCTGCAGCTGGAGGCGACTACACAATTTCGAAAACTGCTTTCTATTGAGCGGAGCCCTCCAATTGAGGAAGTTATCCAATCTGGTGTTGTGCCGCGTTTTGTTGTCGAGTTTCTAGTTAGGGAAGATTTCCCTCAACTGCAGTTTGAGGCTGCATGGGCTCTTACTAATATAGCATCTGGAACATCTGAGAACACCAAAGTGGTAATTGATCACGGGGCAGTCCCAATATTCGTTAAGCTACTCAGTTCTCCAAGTGATGATGTTCGAGAGCAGGCAGTGTGGGCATTGGGAAATGTTGCCGGTGACTCCCCTAGGTGCCGTGATCTTGTTCTCAGTCATGGTGCTTTAGGCCCCTTATTGGCCCAGTTGAATGAGCATGCAAAGCTTTCAATGTTGAGAAATGCCACGTGGACACTATCCAATTTTTGTAGGGGCAAGCCACAACCCCCATTTGAGCAGGTGAAGCCAGCACTTCCTGCTTTAGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTCCTGACTGATGCATGCTGGGCACTTTCATATCTATCTGATGGAACAAACGACAAAATCCAAGCAGTTATTGAAGCAGGCGTTTGTGGCCGATTAGTGCAGCTCCTTCTGCATCCAGCTCCTTCAGTTCTTATCCCTGCTCTTCGCACAGTGGGAAATATTGTGACTGGAGATGATATTCAGACTCAGAGTATTATTAATCACGGTGCACTGCCATGCCTTTTGAGCCTGTTGACACATAATCATAAGAAAAGCATCAAGAAAGAAGCCTGCTGGACCATATCAAACATTACTGCTGGAAACAGAGAGCAAATACAGGCTGTTATTGAAGCCGGTCTGATTGCTCCACTTGTCAATCTCCTTCAAAATGCTGAGTTTGATATAAAAAAGGAAGCTGCATGGGCAATCTCAAATGCTACATCTGGTGGTACTCACGAGCAGATAAAGTACTTGGTGAGTCAAGGGTGCATAAAGCCGCTATGTGATCTGCTTATTTGCCCGGATCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGGGAGGCAGAGAAGAGCCTAGGTAATACTGGAGATGTCAACTTGTACGCGCAAATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGACAACAATGAAATATATGAGAAAGCTGTAAAAATCCTCGAGACATACTGGTTGGAAGAAGAGGACGAGACGCTGCCTTCAGGAGATGGTGCTCAAACTACTTTCAATTTTGGAGGCAGTGAGAATTCAGTCCCATCTGGTGGATTCAACTTCAGTTGA 1596 0.4674 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPIQASTVEKKLESLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALGPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVKPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPAPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQTTFNFGGSENSVPSGGFNFS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1809g00006 531 PIRSF Importin_alpha 2 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pral1809g00006 531 Pfam Atypical Arm repeat 458 502 IPR032413 -
Pral1809g00006 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Pral1809g00006 531 SMART arm_5 149 189 IPR000225 GO:0005515
Pral1809g00006 531 SMART arm_5 105 147 IPR000225 GO:0005515
Pral1809g00006 531 SMART arm_5 317 358 IPR000225 GO:0005515
Pral1809g00006 531 SMART arm_5 360 400 IPR000225 GO:0005515
Pral1809g00006 531 SMART arm_5 275 315 IPR000225 GO:0005515
Pral1809g00006 531 SMART arm_5 403 443 IPR000225 GO:0005515
Pral1809g00006 531 SMART arm_5 234 273 IPR000225 GO:0005515
Pral1809g00006 531 SMART arm_5 190 232 IPR000225 GO:0005515
Pral1809g00006 531 MobiDBLite consensus disorder prediction 506 531 - -
Pral1809g00006 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Pral1809g00006 531 SUPERFAMILY ARM repeat 6 501 IPR016024 -
Pral1809g00006 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 160 IPR000225 GO:0005515
Pral1809g00006 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Pral1809g00006 531 PANTHER IMPORTIN ALPHA 12 502 - -
Pral1809g00006 531 MobiDBLite consensus disorder prediction 38 57 - -
Pral1809g00006 531 FunFam Importin subunit alpha 11 50 - -
Pral1809g00006 531 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Pral1809g00006 531 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Pral1809g00006 531 Pfam Armadillo/beta-catenin-like repeat 106 147 IPR000225 GO:0005515
Pral1809g00006 531 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Pral1809g00006 531 Pfam Armadillo/beta-catenin-like repeat 320 358 IPR000225 GO:0005515
Pral1809g00006 531 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Pral1809g00006 531 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Pral1809g00006 531 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Pral1809g00006 531 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Pral1809g00006 531 Gene3D - 11 50 IPR036975 GO:0006606
Pral1809g00006 531 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Pral1809g00006 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Pral1809g00006 531 FunFam Importin subunit alpha 73 497 - -
Pral1809g00006 531 MobiDBLite consensus disorder prediction 502 531 - -
Pral1809g00006 531 Gene3D - 73 497 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1809g00006 Pral-Chr1809 35861 40473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1809g00006 132 392 U-box Gene Family AT3G46510 24.809 5.89e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1809g00006 K15042 - gmx:100808498 995.342