Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1809g00005 ATGGTGGATCCGAGCGGCAAAGGATCGGAAGCCGACGGCGCTAATGCGAGGAATCCAAATGGGGCTTCGTCGGAAGAGAGCCCAGCAATGAACGAGCCTAAGAAGACGTGCGCCGATTGCGGCACCAGCAAGACACCTCTCTGGCGAGGCGGTCCGGCTGGGCCTAAGTCACTGTGCAACGCTTGTGGGATCAAAAGCAGGAAGAAGAAGAGAGCGATTCTGGGTTTGAACAAGGGAAGCATCGAGGAGAAGAAAGGAAAGAGAAACAGTACTAACAACAACAATGGAAGCAGCAAGATTGGGGACAGTTTGAAGCAAAGGTTAATGGCGTTGGGAGGGGAGGTTTTGATGCAGAGGAAGAAGCTGGGGGAGGAAGAGCAAGCAGCAGTTCTATTGATGGCTCTCTCATATGGATCCGTTTATGCTTAG 429 0.5245 MVDPSGKGSEADGANARNPNGASSEESPAMNEPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIKSRKKKRAILGLNKGSIEEKKGKRNSTNNNNGSSKIGDSLKQRLMALGGEVLMQRKKLGEEEQAAVLLMALSYGSVYA 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1809g00005 142 CDD ZnF_GATA 36 87 IPR000679 GO:0006355|GO:0043565
Pral1809g00005 142 SMART GATA_3 31 81 IPR000679 GO:0006355|GO:0043565
Pral1809g00005 142 MobiDBLite consensus disorder prediction 1 52 - -
Pral1809g00005 142 MobiDBLite consensus disorder prediction 77 103 - -
Pral1809g00005 142 ProSitePatterns GATA-type zinc finger domain. 37 62 IPR000679 GO:0006355|GO:0043565
Pral1809g00005 142 Pfam GATA zinc finger 37 71 IPR000679 GO:0006355|GO:0043565
Pral1809g00005 142 Gene3D - 32 98 IPR013088 GO:0006355|GO:0008270
Pral1809g00005 142 ProSiteProfiles GATA-type zinc finger domain profile. 31 67 IPR000679 GO:0006355|GO:0043565
Pral1809g00005 142 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 33 71 - -
Pral1809g00005 142 MobiDBLite consensus disorder prediction 16 30 - -
Pral1809g00005 142 PANTHER OS01G0976800 PROTEIN 15 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1809g00005 Pral-Chr1809 29593 30756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1809g00005 1 142 C2C2-Gata Transcription Factor Family AT3G06740 53.503 4.83e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral1809g00005 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1809g00005 - - qsa:O6P43_021814 208.379