Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1809g00001 ATGAATCTGACCAACGCCAAGGGATCCATGTCAACGGCCAGTTCTAGTACCCCTCGGAAATCAGTCGGTGACGGCGACCAGTTCCCGGCTGGGTTGCGGGTACTGGTGGTGGACGATGATCCCACGTGCCTTATGATCCTTGAGAAGATGCTTCGCAATTGTCTCTACGAAGTAACAAAATGCAATCGAGCTGAGGTTGCATTGTCCCTTCTGAGAGAGAACAAAAACGGGTTCGACATAGTTATAAGCGATGTGCATATGCCAGACATGGATGGCTTTAAGCTTTTAGAGCACATAGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGGGAAAGATGTTGTTATGAAAGGTGTAACACACGGTGCTTGTGATTACCTAATAAAACCTGTGCGTATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAAAGAAAGAATGACTGGAAGGATTTGGAGCAATCCTATAGTGCAGAAGAAGGAGATCGGCAGCAAAAGGCCTCAGATGAAGCTGATTACTCGTCCTCAGCAAATGAAGGAAATTGGAGAAATGCAAAGAAGAAGAGAGACGAGGAGGAGGAAGCAGAGGAGAAGGATGATACTTCTACATTAAAGAAGCCACGCGTTGTTTGGTCCGTTGAGCTCCACCAACAGTTTGTGGCTGCTGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCATCTCCAGAAATATCGTCTATATCTGAGAAGACTCAGTGGCGTTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAGTCCACAAGAAGCAACCTTTGGGACAATGTCAGCATTTAATGGAATAGATCTTCAAGCTCTTGCAGCTGCTGGTCAGCTTCCGGCACAAAGTCTGGCAGCACTTCAAGCAGCAGGACTTGGCAGATCAACTGCTAAAGTTGGAGTATCTGTGCCCCTTCTTGATGAAAGGAACCTTTTCAGCTTTGAAAACCCCAGATCAAGATTTGGAGATGGGCAACAGCAGCACCTCAGCAGTACTAAATCAACAAACTTGCTTCATGGAATTCCTACCAACATGGAGCCAAGGCAGCTTGCCAATTTGCACCAATCAACACAATCCCTTGGCAGCATGAATGTGCGAGTCAATGGATCTGCTGCACAGAGCAACTCTTTATTGATGCCAATGGCTCAACCTCAACCAAGAGGTCAGATGCTCAATGAAAATACTGCTTCGCATGTTCCAAGACTTCCATTATCTGTTGGGCTGCCTACTGTACCAAATGGAATTTCTAATGCTGCGTTGGCAAGAAATGGGATTGCTGGTAATAACAGAGGAGCTGCTTATAATCCTATTCCACAAACTTCTTCAATGTCGATTTTTCCCACAAACCAAACTTCAGAAGTGTCCGTCAGTAGTTTCCCACTTGGAAGCGCCCCGGGCATATCTAGTATCCCACCAAAAGGCGCATTTCAGGAGGAAGATACTTCGGGAGTTAAAGGATCTGGGGGATTTGTGCCAAGTTATGATATTTTTGATGAGCTGCACCAGCAAAAGCCTTTACATGACTGGGGACAAAATGTGGGCCTCACGTATGATACCCCTCAGCGTGCAAATCCTTTACACGGTAGCATTGATGTCTTGCCATCAGTTATAGTAAATCAGAGCTTTTCTTCCTCCGCCCAACAGACCGGACAGAATAGGAATTCTACTCTGATTGGAAAAGCCATGTACTCCCAAGGGAAAGGTTTGGAACAAGGAAATATCCAAAATATTGATCAAAACCTCCATCCACTCGTTGAAAATTCTACAAGGGTTAAGACTGAAATAATTTCTGATGCAAACTCTCATTCTAACTTCTTCCCCGATCATTATGGGCAGGATGATCTCATGAGTGCACTTCTGAAACAGCAGCATGAAGGCATTGGAGCAGCTGAGAATGAATTTGACTTTGATGGATATTCCTTGGACAACATTCCCGTCTAG 2040 0.45 MNLTNAKGSMSTASSSTPRKSVGDGDQFPAGLRVLVVDDDPTCLMILEKMLRNCLYEVTKCNRAEVALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNDWKDLEQSYSAEEGDRQQKASDEADYSSSANEGNWRNAKKKRDEEEEAEEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFISPQEATFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGLGRSTAKVGVSVPLLDERNLFSFENPRSRFGDGQQQHLSSTKSTNLLHGIPTNMEPRQLANLHQSTQSLGSMNVRVNGSAAQSNSLLMPMAQPQPRGQMLNENTASHVPRLPLSVGLPTVPNGISNAALARNGIAGNNRGAAYNPIPQTSSMSIFPTNQTSEVSVSSFPLGSAPGISSIPPKGAFQEEDTSGVKGSGGFVPSYDIFDELHQQKPLHDWGQNVGLTYDTPQRANPLHGSIDVLPSVIVNQSFSSSAQQTGQNRNSTLIGKAMYSQGKGLEQGNIQNIDQNLHPLVENSTRVKTEIISDANSHSNFFPDHYGQDDLMSALLKQQHEGIGAAENEFDFDGYSLDNIPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1809g00001 679 FunFam Two-component response regulator 32 169 - -
Pral1809g00001 679 PIRSF RR_ARR_type-B 7 670 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pral1809g00001 679 MobiDBLite consensus disorder prediction 1 22 - -
Pral1809g00001 679 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Pral1809g00001 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Pral1809g00001 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 315 IPR045279 GO:0009736
Pral1809g00001 679 FunFam Two-component response regulator 208 271 - -
Pral1809g00001 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Pral1809g00001 679 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Pral1809g00001 679 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Pral1809g00001 679 SUPERFAMILY CheY-like 31 152 IPR011006 -
Pral1809g00001 679 MobiDBLite consensus disorder prediction 161 175 - -
Pral1809g00001 679 MobiDBLite consensus disorder prediction 352 373 - -
Pral1809g00001 679 MobiDBLite consensus disorder prediction 161 209 - -
Pral1809g00001 679 Gene3D - 32 170 - -
Pral1809g00001 679 MobiDBLite consensus disorder prediction 1 24 - -
Pral1809g00001 679 SMART REC_2 32 144 IPR001789 GO:0000160
Pral1809g00001 679 CDD REC_typeB_ARR-like 34 148 - -
Pral1809g00001 679 MobiDBLite consensus disorder prediction 188 209 - -
Pral1809g00001 679 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Pral1809g00001 679 Gene3D - 209 271 - -
Pral1809g00001 679 MobiDBLite consensus disorder prediction 351 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1809g00001 Pral-Chr1809 10617 14343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1809g00001 66 679 Response Regulator Gene Family AT3G16857 49.696 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pral1809g00001 Response_reg 5.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1809g00001 - K14491 gmx:100814930 1032.32