Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1808g00006 ATGGCTCCCATTTTTGATGCAATTCGTTCCCTTAATCCTAGCAGGCAGAATTGGCGGATTAGAGTTCGTGTAGTTCGTCTGTGGACCATGCCTGGCCGCTATTCCCATGAAGAACTCTCCTCTATTGAGATGCTCCTTCGAGATGAGGATGGTGATAACATACATGCTCAGGTTAAGAGTCCCTTCATTACTCGTCATCTGAATAACTTCACAGAAGGGAAGCTTTGTGTTATTTCCTACTTCATGGTTACACCGAATTATGGGTCGTATAGGACAACTGATCACCCATATCGAATGAGCTTTATGTATTCCACGGCAGTCCGTCCCCTTCCGGAAGATGACCGTATTCATCAGTTTGGATTTACCTTCCGTTCGTTTGCACATATCTTGTCAAATCAGTTTGATGATCGCTACTTGACTGATGTCATCGGGATGTTGTCTGCTATTGGAGAGAAGGAGGAGTGCAATATCAATGGCCAGACACAGCGCAGAGTTAATGTGGAATTGATGGACGATGGAATGGAGAAGCTTGAGTGCACACTCTGGGGGGATTTTGCAGATGAGATTCTCCAATTCATGGCAGGGGATATATCCAGTCCTGTTGTTGTCATTATCCAACTATGTAAAGATGGTGTGTGTGTTGTTCTAGCGGATATAGTAGACTTTCGTACTGAGAAGGGTTGGATGTATGTCTCTTGTAAGCATTGTGGAAAAAAAGTGGTGCCTGATGGGGAGGGGTTTTTTTGTGAGAAGTGTGCTTCCATTATTAAGGTGGTCGTACCAAGGTATATGGTTACTTGTGAGGTTATGGATGAGAGTGGATCCTGCAGCGTTGTCATATTTGACAGAGAGTTTTCTAGGATGGTTGGTTGTTCTGCAGCAGAGATGAGGGACCGCATTCTCAAACAGTTTGGTGATGAAGGGGTTGGTGATGGAGATGGAATCCCAGCAAGCATCTTAGAGCCCCTCACTTGGAAGAGATACTTATTTAAACTGCGTGTTCCTGAGGATTATGTAAAGACATATTCAAACACATGTATCGCTGTGCGCTTGACCAGTGATAAGGATATAATTCATTCCTATCAAAATTTAATAGCAGAGAAGATGTCATCTCAGAATCTTGCTATGGAAGCTGACGTTCAGCATAAGGCTGTTGTTGGGCTCCCATCCAAGGGTGCTATTGGAGAAAATGCTGATGTATCTTCAAAGATCGAGGTGAATGAGCAAGGTCCTGATGTGGAAGCTGATGGTGAAGGAAACAATAAAGATGATAGCTTGGCGGTTTTACGTCGTCGTGGGAAGGCAAAACGGAAGTTGACCATTGAAGATTAA 1332 0.4392 MAPIFDAIRSLNPSRQNWRIRVRVVRLWTMPGRYSHEELSSIEMLLRDEDGDNIHAQVKSPFITRHLNNFTEGKLCVISYFMVTPNYGSYRTTDHPYRMSFMYSTAVRPLPEDDRIHQFGFTFRSFAHILSNQFDDRYLTDVIGMLSAIGEKEECNINGQTQRRVNVELMDDGMEKLECTLWGDFADEILQFMAGDISSPVVVIIQLCKDGVCVVLADIVDFRTEKGWMYVSCKHCGKKVVPDGEGFFCEKCASIIKVVVPRYMVTCEVMDESGSCSVVIFDREFSRMVGCSAAEMRDRILKQFGDEGVGDGDGIPASILEPLTWKRYLFKLRVPEDYVKTYSNTCIAVRLTSDKDIIHSYQNLIAEKMSSQNLAMEADVQHKAVVGLPSKGAIGENADVSSKIEVNEQGPDVEADGEGNNKDDSLAVLRRRGKAKRKLTIED 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1808g00006 443 SUPERFAMILY Nucleic acid-binding proteins 209 353 IPR012340 -
Pral1808g00006 443 Gene3D - 115 208 IPR012340 -
Pral1808g00006 443 MobiDBLite consensus disorder prediction 415 429 - -
Pral1808g00006 443 CDD RPA1_DBD_A_like 19 107 - -
Pral1808g00006 443 SUPERFAMILY Nucleic acid-binding proteins 121 205 IPR012340 -
Pral1808g00006 443 SUPERFAMILY Nucleic acid-binding proteins 5 118 IPR012340 -
Pral1808g00006 443 Gene3D - 5 109 IPR012340 -
Pral1808g00006 443 PANTHER OS03G0429900 PROTEIN 222 360 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral1808g00006 443 Pfam Replication factor-A C terminal domain 219 340 IPR013955 -
Pral1808g00006 443 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Pral1808g00006 443 CDD RPA1_DBD_C 209 337 IPR047192 -
Pral1808g00006 443 MobiDBLite consensus disorder prediction 398 429 - -
Pral1808g00006 443 CDD RPA1_DBD_B_like 141 209 - -
Pral1808g00006 443 Gene3D - 209 367 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1808g00006 Pral-Chr1808 72578 74904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1808g00006 3 217 Core DNA Replication Machinery Family AT5G45400 24.434 8.87e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1808g00006 - - pcin:129310753 282.722