Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1801g00006 ATGGCTGAGCGTGGCGGAGATCGTGGTGGTTTTGGACGTGGCTTTGGCGGCCGTGGACGCGGAGATCGTGGCCGAGGTGGACGACGCAGAGCTGGTGGTCGCCGCGAAGAGGAGGAGAAATGTTCCGTTGACAAAACTCTTGGCCGTCTCGTCAAGGAGGGAAAGATCCGCCACCTCGAACAGATCTATCTTCATTCTCTCCCGATCAAGGAGCATCAAATTGTTGATACATTGGTTGGTCCCAGTCTGAAGGATGAAGTCATGAAGATTATGCCTGTGCAGAAACAGACCAGGGCCGGGCAGAGAACTCGATTCAAGGCGTTTGTTGTCGTTGGTGACGGAAATGGACACGTGGGCCTCGGTGTTAAGTGTAGCAAGGAGGTCGCCACTGCCATTCGTGGTGCCATTATATTGGCCAAGCTCTCGGTGATTCCTGTGAGAAGAGGTTACTGGGGTAACAAGATCGGGAAGCCCCACACTGTCCCGTGCAAGGTTACTGGTAAGTGTGGTTCAGTCACAGTGCGTATGGTTCCCGCTCCTCGGGGTGCTGGAATTGTTGCTGCTAGGGTGCCGAAGAAGGTATTGCAGTTCGCTGGTATTGAGGATGTCTTCACTTCTTCAAGAGGGTCGACTAAGACTCTTGGAAATTTTGTCAAGGTTCGTTCCAAATAA 672 0.5283 MAERGGDRGGFGRGFGGRGRGDRGRGGRRRAGGRREEEEKWXSVDKTLGRLVKEGKIRHLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKVRSK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1801g00006 224 MobiDBLite consensus disorder prediction 1 37 - -
Pral1801g00006 224 FunFam 40S ribosomal protein S2 147 224 - -
Pral1801g00006 224 Pfam Ribosomal protein S5, N-terminal domain 84 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pral1801g00006 224 ProSitePatterns Ribosomal protein S5 signature. 101 133 IPR018192 -
Pral1801g00006 224 FunFam 40S ribosomal protein S2 40 146 - -
Pral1801g00006 224 Gene3D - 147 224 IPR014721 -
Pral1801g00006 224 Gene3D - 40 146 - -
Pral1801g00006 224 Pfam Ribosomal protein S5, C-terminal domain 168 220 IPR005324 GO:0003735|GO:0005840|GO:0006412
Pral1801g00006 224 ProSiteProfiles S5 double stranded RNA-binding domain profile. 84 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pral1801g00006 224 NCBIfam 30S ribosomal protein S5 36 220 IPR005711 GO:0003735|GO:0006412|GO:0015935
Pral1801g00006 224 PANTHER RIBOSOMAL S SUBUNIT 36 219 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pral1801g00006 224 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 220 IPR020568 -
Pral1801g00006 224 SUPERFAMILY dsRNA-binding domain-like 80 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1801g00006 Pral-Chr1801 47195 47974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1801g00006 37 220 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.761 6.28e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1801g00006 K02981 - zju:107403978 359.762