LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1790g00002	ATGGAGCAGAACGACGTGATTCCACCGTTTGTTATAAAGACTTTCCATATGGTGAGCGATCCCGCCACCGATGCTTTTATCACCTGGGGTCGAGGCAACAATAGCTTCATCGTCATCGATCCTTTGGATTTCTCTCGGGTGATCCTGCCTGCATATTTCAAACACAACAACTTCTCCAGCTTCGTTCGTCAGTTAAACACCTACGGGTTTAGAAAAGTGGATCCAGATCGGTGGGAATTCGCGAACGAGTGGTTCCTTCGGGGGCAGAAGCACTTGTTGAAGAATATTGTGAGGAGGAAACAAAGTAGGAGTAGCTCTTTGTTGTTTCAGGGGAAGAATGAAGATGTGGAAGACGAAGCGTTGATGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAGTCGATGGAGGAGGAGCTTCAAGGAATGCATAAGAGATTGGAGACAACAGAGAAACGACCCCAGCAAATGATGGCGTTTCTGTGCAAAGTCGTGGAGGACCCAGATGTCCTTTCTCGTATTTTGTTAGAGAAAGAGCAGAAGCAATTGGGAGAGAAGAAGCGGCGGCTGATATCTTCATCGCCGTCGTCTTCGTCCGGTATGGCGGCGGTGAAGACAGAGTTTGAGGAAGAGGAAGCTGCTTTGGGCGCGATAATATCTTCGCCGTCGCCGGAAGCGACTACTGGTTTTGAGTTTGGTCGTTATAATATGGCATCTCCGACGGAGGAAACAATGATATGCGGCGCCGATACGAGTTCGGGTTGGTGGAACGAGAGAAATGATAGTATAATGGTGAGGCCTCGGATATATCAACACGCTTATAATTATTGCAACGCTGGGTCCCCAACGCCGTTGACGGCGGTTGTGGCGGCGAGGTCGATGTCGGCGCGTGAGGGAGAAAGCAACTCGGCGAGCGAGGAGCAAAGGAGCTACTTTACAGAAATGGCGGCGGAGAGCAGTCCACGGCCACCTTATCCATTTTCGCTGTTGGAAGGTGGCTTCTAG	1002	0.503	MEQNDVIPPFVIKTFHMVSDPATDAFITWGRGNNSFIVIDPLDFSRVILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRRKQSRSSSLLFQGKNEDVEDEALMMEIARLKEEQKSMEEELQGMHKRLETTEKRPQQMMAFLCKVVEDPDVLSRILLEKEQKQLGEKKRRLISSSPSSSSGMAAVKTEFEEEEAALGAIISSPSPEATTGFEFGRYNMASPTEETMICGADTSSGWWNERNDSIMVRPRIYQHAYNYCNAGSPTPLTAVVAARSMSAREGESNSASEEQRSYFTEMAAESSPRPPYPFSLLEGGF	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1790g00002	333	Coils	Coil	118	152	-	-
	Pral1790g00002	333	FunFam	Heat shock transcription factor 1	3	100	-	-
	Pral1790g00002	333	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral1790g00002	333	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral1790g00002	333	Gene3D	-	2	100	IPR036388	-
	Pral1790g00002	333	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral1790g00002	333	MobiDBLite	consensus disorder prediction	294	323	-	-
	Pral1790g00002	333	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Pral1790g00002	333	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral1790g00002	333	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral1790g00002	333	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pral1790g00002	333	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	210	IPR027725	-
	Pral1790g00002	333	MobiDBLite	consensus disorder prediction	295	314	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1790g00002	Pral-Chr1790	26977	28586	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1790g00002	6	197	HSF	AT3G24520	64.286	2.46e-86	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pral1790g00002		HSF_DNA-bind	6.5e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1790g00002	K09419		-	qsa:O6P43_007930	370.548