Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral178g00003 ATGATAATGGGGAGGGACAAGAACAGTAGTAAGAACAATAATAACGTTGTGAAGCTAAGGAAGGGGTTGTGGTCGCCGGAGGAGGATGAGAAGCTGATAAGGTACATGTTGACCAATGGACAAGGTTGCTGGAGTGACATTGCCAGAAATGCAGGTCTTCAACGTTGTGGTAAAAGTTGTCGCCTTCGTTGGATTAATTATCTCAGACCTGACCTTAAGAGAGGCGCTTTCTCTCTCCAAGAAGAACAACTCATTCTCCATTTTCATTCCATTCTTGGCAATAGGTGGTCTCAGATAGCAGCACGTCTTCCAGGACGCACAGACAATGAGATTAAGAATTTCTGGAACTCTACTTTAAAGAAAAGGATGAAAAACAACACTGCTTGTACTACTGCTGCTACTACTTCCACTGCTATTCCTTCACCAAACAACAGTACAGACTCATCATCAAATCATATTATGCTGAATGGCATCACCACCACCACCACCACCACATCCTCAATGCCCTTCATCAACATGACCATGTGCAATATGGACTCATCACCTTCATCAATATCATCATCTTCATCGGCATCCGTACAATCCATGCAAGCCGCAGCTTTTGGTGGTGACCACCAGTTAATGGAGTATCCCTTTTCCATGTTGAATAATCACAGTAATATTCCTTATGATATGCCTGCATCCTTTGGTGGTGATGGTGGCGGCGGCGTGGTGGAGGATGGGTTTTACGGAGATGATTATAATAATGGAACGGGGTTAGAGGGAGAAGATAGTAAAATAATGGGGTTAGAAAGAGACCTGTGTCTTCCTCCTCTAGAGAGTAGAAGCATGGAAGAGAAGTATAATAACAGTAGTGTTGTTCCTACTGATGTGAAAAGTCAAATCAACAACAACCATTTTAATAATGGTTGCTTCAATAACACTGATCATCATCATCATCATCAGGACTTGGTCGGGTTTGGGAATTATAATCATGGACAATCAGGAGAAAACTTAAGAGTGGGAGAATGGGATTTGGAGGGTTTGATGCAAGATATATCCTCTTTTCCTTTCCTTGATTTTCAAGTTGAATGA 1074 0.4209 MIMGRDKNSSKNNNNVVKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSLQEEQLILHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKNNTACTTAATTSTAIPSPNNSTDSSSNHIMLNGITTTTTTTSSMPFINMTMCNMDSSPSSISSSSSASVQSMQAAAFGGDHQLMEYPFSMLNNHSNIPYDMPASFGGDGGGGVVEDGFYGDDYNNGTGLEGEDSKIMGLERDLCLPPLESRSMEEKYNNSSVVPTDVKSQINNNHFNNGCFNNTDHHHHHQDLVGFGNYNHGQSGENLRVGEWDLEGLMQDISSFPFLDFQVE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral178g00003 357 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Pral178g00003 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Pral178g00003 357 FunFam MYB transcription factor 18 74 - -
Pral178g00003 357 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Pral178g00003 357 SMART sant 20 70 IPR001005 -
Pral178g00003 357 SMART sant 73 121 IPR001005 -
Pral178g00003 357 CDD SANT 76 119 IPR001005 -
Pral178g00003 357 PANTHER MYB DOMAIN PROTEIN 55 3 289 - -
Pral178g00003 357 Gene3D - 76 144 - -
Pral178g00003 357 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Pral178g00003 357 CDD SANT 24 68 IPR001005 -
Pral178g00003 357 Pfam Myb-like DNA-binding domain 24 84 - -
Pral178g00003 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 68 IPR017930 -
Pral178g00003 357 Gene3D - 18 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral178g00003 Pral-Chr178 29766 32654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral178g00003 4 357 MYB Transcription Factor Family AT3G08500 45.787 1.93e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral178g00003 Myb_DNA-bind_6 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral178g00003 K09422 - zju:107417581 344.739