Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral178g00002 ATGAATGATGGTAGACCGATGGAGCTGCATTACATCAACCCTGTTTTTCCATATACTACTACTGAAAGCTTCATGGAGTTTTTCGACGGACCGCCAGTGGATTATGATCACGCTGGACCAATTCCTTATCAGGAATACTGGTCAATGAACATGAACCCTTACAAGTTTGGATTGTCTGGTCCGGATGGTGCATCTTATTATGGTTCTTACGAAGAAGATAATAGTTTCCCTAGACTGGAGGTCGACAGGGGAGAGTGGGAATATCCTTTAACAACGACCACTGAGGAGCCCACCACAACAGGCTCTCCATCCAGAGGGGACGGAGTGAATGGGATGCAGACCATTACTGAACAATCCAGCCCAAATCGTCATGATTCCAGTAGTGCTCCGGTTATATGGCAAGACAACATCGATCCAGATAATATGACTTATGAGGAATTACTGGACTTGGGTGAGGCAGTTGGAACTCAAAGCCGAGGTCTTTCTCAAGAACTTATTGATTTACTGCCGACCTCGAAGTTCAAATTTGGAAACTTATTTAAAAGAAAAAATTTTGGGAAAAGGTGCGTTATTTGTCAGATGACGTATAGAAGAGGTGACCAACAAATAAAATTACCCTGCCGGCATGTTTACCATGGCGAATGCATCAGTAAATGGCTTAGCATTAACAAGAAATGCCCAGTTTGCAGCGTTGAGGTATTTGGTGTGGAATCAACACAGTAG 723 0.4343 MNDGRPMELHYINPVFPYTTTESFMEFFDGPPVDYDHAGPIPYQEYWSMNMNPYKFGLSGPDGASYYGSYEEDNSFPRLEVDRGEWEYPLTTTTEEPTTTGSPSRGDGVNGMQTITEQSSPNRHDSSSAPVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDLLPTSKFKFGNLFKRKNFGKRCVICQMTYRRGDQQIKLPCRHVYHGECISKWLSINKKCPVCSVEVFGVESTQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral178g00002 240 Pfam Ring finger domain 188 229 IPR001841 -
Pral178g00002 240 FunFam E3 ubiquitin ligase BIG BROTHER 151 234 - -
Pral178g00002 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 234 IPR013083 -
Pral178g00002 240 SUPERFAMILY RING/U-box 188 234 - -
Pral178g00002 240 SMART ring_2 189 229 IPR001841 -
Pral178g00002 240 MobiDBLite consensus disorder prediction 91 131 - -
Pral178g00002 240 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 235 IPR033276 GO:0004842|GO:0016567|GO:0046621
Pral178g00002 240 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Pral178g00002 240 MobiDBLite consensus disorder prediction 90 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral178g00002 Pral-Chr178 10630 14844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral178g00002 3 235 C3H Transcription Factor Family AT3G63530 53.333 9.55e-91 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral178g00002 K19045 - gmx:100785290 369.007