Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1789g00005 ATGGCCAGTTTCGTAGGAACCACACAGAAGTGCACAGTCTGTGACAAAACCGCCTACCCCGTCGATCGGTTAACCGCCGACGGCCGTGTTTACCATAAGGCTTGCTTCCGATGCCACCATTGCCGGAATACCCTCAAGCTGAGCAACTACTGTTCATTCGAAGGGGTGCTATATTGCAGACCCCATTATGATCAGCTCTACAAACGAACTGGTAGCCTTGAGAAGAGCTTTGAAGGAACACCCAAGATTCAAAAACCTGAAAAACAAACAGATAACGAGAATGCAAAGATTCTCTCAAACGTGTTCTTGGGTACCAAAGACAAATGTGCAGGTTGCCAGAAGACAGTTTATCCTACCGAGAGGGTAACAGTGAATGGGACTCCATATCACAAAGGGTGCTTCAAGTGCAGCCATGGAGGCTGTACGATAACCTCAGCCAACTTCATCACTCACGAGGGAAAGCTATACTGCAAGCACCATCACGTTCAACTTTTCAAAGAAAAAGGCAATTACAGCCAGCTCGACGGCGACGCCCGAGATCGCAGCGCCAATCCTTCTTTGAAAGTCGGTGCTTAA 576 0.4826 MASFVGTTQKCTVCDKTAYPVDRLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLEKSFEGTPKIQKPEKQTDNENAKILSNVFLGTKDKCAGCQKTVYPTERVTVNGTPYHKGCFKCSHGGCTITSANFITHEGKLYCKHHHVQLFKEKGNYSQLDGDARDRSANPSLKVGA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1789g00005 191 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Pral1789g00005 191 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Pral1789g00005 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Pral1789g00005 191 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Pral1789g00005 191 FunFam LIM domain and actin-binding 1 5 75 - -
Pral1789g00005 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Pral1789g00005 191 FunFam LIM domain and actin-binding 1 103 173 - -
Pral1789g00005 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Pral1789g00005 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Pral1789g00005 191 PANTHER OS06G0237300 PROTEIN 6 94 - -
Pral1789g00005 191 SMART lim_4 10 62 IPR001781 -
Pral1789g00005 191 SMART lim_4 108 160 IPR001781 -
Pral1789g00005 191 Pfam LIM domain 109 164 IPR001781 -
Pral1789g00005 191 Pfam LIM domain 11 65 IPR001781 -
Pral1789g00005 191 Gene3D Cysteine Rich Protein 5 75 - -
Pral1789g00005 191 Gene3D Cysteine Rich Protein 104 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1789g00005 Pral-Chr1789 35264 36995 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pral1789g00005 LIM 3.7e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1789g00005 K09377 - gmx:100306027 330.872