Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1787g00021 ATGGCTGTACTGTGGCTTTGTGATCGGAGCACTGTCAACGACAGCAGCTCTGATACCATGCCAAAAGTTGGAAATGAAAGCAACAACTTAGAACCTCTGCAATTTAGTTTGGTCACTATTGAAGCTGCAACAAATAATTTTTCAGATGACAAGTGTTTATTAGGACGAGGTGGATTTGGAAGAGTTTACAAGGGCATTCTTTCAAACGGCCAAGAAATAGCTGTCAAGAGACTTTCAAAATGTTCAGGTCAAGGCGCAGAAGAATTTAAGAACGAGATTTTATTAATTGCCAAACTCCAGCACAGAAATTTGGTAGCTTTACTTGGATTTTGCATAGAAGAACAAGAGAAAATTATTATCTATGAATATGTTCCGAACAAAAGCCTTGATTACTTTCTATTTGGTTCCATAGAAGGAAAAGTATTAAGTTGGATGGAGCGTTGTAAAATCATTGGAGGAGTAGCTCGAGGAATTCATCATCTCCATGAGTATTCCCGTCTTAAAATTATACATCGTGATTTAAAGCCAAGCAATATTTTATTAGATGATGAAATGAATCCAAAAATTTCTGATTTTGGATTAGCTAAAATGGTTGCCATCAACTCACAAGAGGGAAGTACAAATAGAATTGTTGGAACGTATGGTTATATGTCTCCAGAATATGCGATGTACGGACAATATTCTGAAAAATCAGATGTTTTCAGTTTTGGAGTTATAATTTTAGAAATCATTAGTGGAAAGAAGAACACAAGTCGTCAAAATGAATCACAATATGTTGATGGCCTATTGAGCTATGCTTGGAAGCAGTGGAAAGAGGAAAAGTTGCTGGAGATATTAGATTTAAATATAAAAGAATTTGGGTCATATAATGAAGTGATCAGATGCATCCATATTGGTTTGCTATGTGTTCAAGAAAATCCAGATTCAAGACCCACAATGGCAACGGTTGTTTCATATCTTAGTAATGATTCCATTCAGCTGCCATTGCCACGGGAACCTGCATTCTTTCTGCACGATGGAATGGAGCCCCGTACCAGTGCAAGTAAGGAATCAGCCTCAACTGTTCAAGTGTCTATGAGTGAATTCTTTCCTCGTTAG 1098 0.3707 MAVLWLCDRSTVNDSSSDTMPKVGNESNNLEPLQFSLVTIEAATNNFSDDKCLLGRGGFGRVYKGILSNGQEIAVKRLSKCSGQGAEEFKNEILLIAKLQHRNLVALLGFCIEEQEKIIIYEYVPNKSLDYFLFGSIEGKVLSWMERCKIIGGVARGIHHLHEYSRLKIIHRDLKPSNILLDDEMNPKISDFGLAKMVAINSQEGSTNRIVGTYGYMSPEYAMYGQYSEKSDVFSFGVIILEIISGKKNTSRQNESQYVDGLLSYAWKQWKEEKLLEILDLNIKEFGSYNEVIRCIHIGLLCVQENPDSRPTMATVVSYLSNDSIQLPLPREPAFFLHDGMEPRTSASKESASTVQVSMSEFFPR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1787g00021 365 SUPERFAMILY Protein kinase-like (PK-like) 30 347 IPR011009 -
Pral1787g00021 365 Pfam Protein kinase domain 53 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1787g00021 365 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Pral1787g00021 365 Gene3D Transferase(Phosphotransferase) domain 1 124 327 - -
Pral1787g00021 365 Gene3D Phosphorylase Kinase; domain 1 9 123 - -
Pral1787g00021 365 FunFam cysteine-rich receptor-like protein kinase 10 124 327 - -
Pral1787g00021 365 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 353 - -
Pral1787g00021 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pral1787g00021 365 ProSiteProfiles Protein kinase domain profile. 48 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1787g00021 365 CDD STKc_IRAK 54 320 - -
Pral1787g00021 365 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 9 123 - -
Pral1787g00021 365 SMART serkin_6 48 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1787g00021 Pral-Chr1787 257134 260107 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1787g00021 22 365 Receptor kinase-like Gene Family AT4G11530 53.846 1.81e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral1787g00021 Pkinase 5.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1787g00021 - - pcin:129286093 514.612