LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1786g00001	ATGGAGTTTCCTTTAGGAAGATCTGATCATGAAAGCAGAGTCAACGGACAGAAGAGGAGTGAATCTGGTGGCGGTGGCGATGAAGATCATCATCGGAAAGAAGAGATTGATATTGAGGTGCCACCGGCTGATACTTCTTCTGGACCAATTGTATCTTCAACTAAAAAGGAAGAGGTGGAAGAGCTAGAATGTGCAAAAACGGAAATGGGTGTAGTGAGAGAAGAAAATCAAAGGCTGAAGCGAAGTTTGGATCGAGTTCTGAAGGATTACAGAACACTTGAAATGCAATTCAAAGATATGGTTCAAAAAGGAAGAACCAAACAATCCATTACTTCTGATCATCACAAAGGCTCACCATCATCGGATCACAGTGGTCGAGACATTATTATAACTGAGGAAGAATCTGATGAGCTAGTTTCTCTGAGCCTTGGAAGAGATATTCCCAGTAATAATAATCCAATTAGAAAGCCGCATGATCAGAAAAGCAAAGCTTCGAAAGCATTATTATTGAAGGATGAAGAAGAAGAGGACTTGGCTCTTGGATTGGACTGCAAATTTGAGACATCAAAGTCAGGAAGCTTAAGTACTCATGAAGCTAATAATAATAATAATTCGCCAAATACTATTAATCCAAGCCCTACCAATAGTTCTGAAGAGACACCCAATAAGGAAGAAGAAGAGAGTTGGCAACCAAGCAAAGCACTCAAAACAACCAGAGATACTGCTTGTTCAGCAGAAGACGAAGTTTCCCAGCACAATCCTGCAAAGAAAGCTAGGGTTTGTGTCAGAGCAAGATGCGACACTCCAACTATGAACGATGGATGTCAGTGGAGAAAATACGGACAAAAAATCTCCAAGGGAAATCCTTGTCCTAGGGCATACTATCGTTGTACAGTTGCCCCATCGTGCCCAGTAAAAAAACAGGTACAAAGATGTGCTGAGGATATGTCGGTTTTAGCTACAACTTATGAGGGAATCCATAACCACCCTCTTCCTCTCTCAGCCACCGCCATGGCTTCCACTACTTCTGCGGCAGCTTCCATGCTTTTGTCTGGTTCATCGTCTTCTTCCGCCGCCGCCACAACCGCCACTTCAGCTGATCTCTATGGCCTGAATTTCTCCTTACCAGATGGTTCCACCAGCAGATCAAAACCATTATATCTCTCTAATCCTTCACTCTCATCATTTGCGCCTTCTCACCCAACAATCACTCTCGACCTCACCACAAACTCAGCTGCCTCCAGATTCATGACCTCATCATCATCAAGCTACAACCTAGCTCCAAGATCATCATCATCATTACCATATCCTTCTTCCACAAGTCTCAACTTTAGTACCCCAAACAATAATAGCTTTCTCAGCTATAACAGTAATAACAGGAACATTTTCAGTTCCGTGAACCTTGGAAGGTCGACAATGGATAATGTCTATAGGCTGCCTTACGTACAAAAGAACAGTGTTAGCAATAACCCAACTCATCCTCCTCCCCAACCTACTGCTCTACCGGATGGTATCGCCGCCGCGACCAAGGCCATCGCGGCGGACCCAAAGTTTCAGTCGGCTTTGGCGGTGGCACTTAGCTCAATTATTGGCACAGGAAGTGGCAGTGGAAGCAGCCAAGGCAATCGTGGCGGTGCCGGAGAAAACTTGACTCATCAGAAAATGAAATGGGGAGGGCTGTTTCCAGCATTATAA	1695	0.4431	MEFPLGRSDHESRVNGQKRSESGGGGDEDHHRKEEIDIEVPPADTSSGPIVSSTKKEEVEELECAKTEMGVVREENQRLKRSLDRVLKDYRTLEMQFKDMVQKGRTKQSITSDHHKGSPSSDHSGRDIIITEEESDELVSLSLGRDIPSNNNPIRKPHDQKSKASKALLLKDEEEEDLALGLDCKFETSKSGSLSTHEANNNNNSPNTINPSPTNSSEETPNKEEEESWQPSKALKTTRDTACSAEDEVSQHNPAKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVKKQVQRCAEDMSVLATTYEGIHNHPLPLSATAMASTTSAAASMLLSGSSSSSAAATTATSADLYGLNFSLPDGSTSRSKPLYLSNPSLSSFAPSHPTITLDLTTNSAASRFMTSSSSSYNLAPRSSSSLPYPSSTSLNFSTPNNNSFLSYNSNNRNIFSSVNLGRSTMDNVYRLPYVQKNSVSNNPTHPPPQPTALPDGIAAATKAIAADPKFQSALAVALSSIIGTGSGSGSSQGNRGGAGENLTHQKMKWGGLFPAL	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1786g00001	564	Pfam	WRKY DNA -binding domain	272	330	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral1786g00001	564	MobiDBLite	consensus disorder prediction	99	166	-	-
	Pral1786g00001	564	SMART	WRKY_cls	271	331	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral1786g00001	564	ProSiteProfiles	WRKY domain profile.	266	332	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral1786g00001	564	SUPERFAMILY	WRKY DNA-binding domain	264	332	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral1786g00001	564	Gene3D	WRKY domain	255	333	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral1786g00001	564	MobiDBLite	consensus disorder prediction	108	133	-	-
	Pral1786g00001	564	MobiDBLite	consensus disorder prediction	1	58	-	-
	Pral1786g00001	564	FunFam	probable WRKY transcription factor 31	256	333	-	-
	Pral1786g00001	564	Coils	Coil	62	96	-	-
	Pral1786g00001	564	MobiDBLite	consensus disorder prediction	189	250	-	-
	Pral1786g00001	564	MobiDBLite	consensus disorder prediction	189	218	-	-
	Pral1786g00001	564	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	48	538	IPR044810	GO:0003700
	Pral1786g00001	564	MobiDBLite	consensus disorder prediction	219	233	-	-
	Pral1786g00001	564	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1786g00001	Pral-Chr1786	4521	8054	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1786g00001	22	531	WRKY Transcription Factor Family	AT1G18860	38.545	4.94e-78	254

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pral1786g00001		WRKY	3.8e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1786g00001	-		-	pcin:129309271	678.322