Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1785g00002 ATGCAGAAGTCTCAGGATCAACGGCTAAGATCTGCTAAGCCGGCCACCATCCATGCCTACGCTCATTCCGGGGACCTTGCTGCCTTCCAGAGGCTACTTCGAGACAACCCGTCTCTCCTCAACGAGAGAAACCCTGTTATGGCTCAGACTCCACTTCATGTTTCTGCTGGCCACAATAGGACTGATGTAGTTAAATTTCTTCTCAATTGGCAAGGACCTGATAAAGTTGAGTTGGAGGCCAAGAATATGTATGGAGAGACACCATTGCACATGGCAGCAAAGAATGGATGCAATGAAGCGACGAAGTTACTTCTCGCTCATGGTGCTTTTATTGAAGCTAAAGCAAATAACGGTATGACGCCTCTACATCTTGCCGTCTGGTACTCTCTACGGGCTGAAGAGTGCTTAACTGTGAAAACCTTGCTTGAGTACAATGCTGATTGCAGTGCAAGGACAATCTATGAATTGCAGGAGGGGATGACTCCTTTAAATCACCTTTCTCAAGGCCCTGAAAGTAAGAAACTTAGGGGACTTTTACAGCAGCATCTTGAAGAACAGAGAAGGAGACGGGCTATTGAAGCATGCGGTGAATCCAAAGTTAAAATGGATGAGCTTGAAAATGAAATTGCAAATGTTGTGGGGCTACATGATTTAAAAGTACAATTGAGAAAGTGGGCAAAGGGGATGCTTTTGGATGAGAGACGTAGAGCGCTTGGTCTGCAAGTTGGCCCCAGAAGACCCCCACATATGGCCTTCCTTGGAAATCCTGGAACAGGTAAAACAATGGTAGCTCGGATCCTTGGTAAATTACTCCATATGGTCGGAATTCTACCAACTGATAAAGTGACTGAGGTACAACGAACTGATTTGGTTGGAGAGTTTGTTGGTCATACCGGTCCAAAGACCAGGAGGAAGATAAAAGAAGCAGAAGGGGGAATCCTATTTGTGGATGAAGCCTATAGATTGATACCAATGCAGAAGGCAGATGATAAGGACTATGGATTGGAAGCCTTAGAGGAGATTATGTCTGTCATGGACTCTGGAAAAATCGTGGTTATCTTTGCAGGATACAGTGAACCAATGAAGCGAGTGATCGCTTCAAATGAAGGTTTCTGCAGGCGGGTGACCAAGTTCTCATTTAACGACTTCAATTCGGCCGAACTAGCGGAAATCCTCCACATCAAGATGAGAAATCAAGCAGCAGAAAGCTTGCTGTATGGATTCAAGCTGCATAACTCTTGCAGTGTAGAAGCTGTATCAGCATTGATAGAAAGGGAAACAACAGAAAAGCAACGCGAGGAAATGAATGGGGGTTTGGTGGACACTATGTTGGTTAATGCTAGGGAAAATTTGGATCTCAGGCTTAGCTTTGATTGTATAGATACAGAAGAACTTCTTACCATCACACTGGTAGATTTAGAAGCTGGACTTTGCATATTATCACAGTAA 1449 0.4438 MQKSQDQRLRSAKPATIHAYAHSGDLAAFQRLLRDNPSLLNERNPVMAQTPLHVSAGHNRTDVVKFLLNWQGPDKVELEAKNMYGETPLHMAAKNGCNEATKLLLAHGAFIEAKANNGMTPLHLAVWYSLRAEECLTVKTLLEYNADCSARTIYELQEGMTPLNHLSQGPESKKLRGLLQQHLEEQRRRRAIEACGESKVKMDELENEIANVVGLHDLKVQLRKWAKGMLLDERRRALGLQVGPRRPPHMAFLGNPGTGKTMVARILGKLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKIVVIFAGYSEPMKRVIASNEGFCRRVTKFFXFNDFNSAELAEILHIKMRNQAAESLLYGFKLHNSCSVEAVSALIERETTEKQREEMNGGLVDTMLVNARENLDLRLSFDCIDTEELLTITLVDLEAGLCILSQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1785g00002 483 PRINTS CbxX/CfqX superfamily signature 287 301 IPR000641 GO:0005524
Pral1785g00002 483 PRINTS CbxX/CfqX superfamily signature 208 222 IPR000641 GO:0005524
Pral1785g00002 483 PRINTS CbxX/CfqX superfamily signature 249 264 IPR000641 GO:0005524
Pral1785g00002 483 PRINTS CbxX/CfqX superfamily signature 353 370 IPR000641 GO:0005524
Pral1785g00002 483 PRINTS CbxX/CfqX superfamily signature 301 320 IPR000641 GO:0005524
Pral1785g00002 483 PRINTS CbxX/CfqX superfamily signature 370 389 IPR000641 GO:0005524
Pral1785g00002 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 457 IPR027417 -
Pral1785g00002 483 CDD AAA 245 355 - -
Pral1785g00002 483 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Pral1785g00002 483 Pfam Ankyrin repeats (3 copies) 82 151 IPR002110 GO:0005515
Pral1785g00002 483 ProSiteProfiles Ankyrin repeat region circular profile. 84 109 - -
Pral1785g00002 483 Gene3D - 122 181 IPR036770 -
Pral1785g00002 483 Pfam ATPase family associated with various cellular activities (AAA) 250 364 IPR003959 GO:0005524|GO:0016887
Pral1785g00002 483 SUPERFAMILY Ankyrin repeat 17 165 IPR036770 -
Pral1785g00002 483 Gene3D - 9 121 IPR036770 -
Pral1785g00002 483 PRINTS Ankyrin repeat signature 137 151 IPR002110 GO:0005515
Pral1785g00002 483 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Pral1785g00002 483 FunFam Type VII secretion ATPase EccA 184 382 - -
Pral1785g00002 483 Coils Coil 188 208 - -
Pral1785g00002 483 Gene3D - 183 382 IPR027417 -
Pral1785g00002 483 ProSiteProfiles Ankyrin repeat region circular profile. 117 147 - -
Pral1785g00002 483 Gene3D - 383 478 - -
Pral1785g00002 483 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN 3 477 - -
Pral1785g00002 483 SMART ANK_2a 117 150 IPR002110 GO:0005515
Pral1785g00002 483 SMART ANK_2a 47 78 IPR002110 GO:0005515
Pral1785g00002 483 SMART ANK_2a 84 113 IPR002110 GO:0005515
Pral1785g00002 483 ProSiteProfiles Ankyrin repeat profile. 117 153 IPR002110 GO:0005515
Pral1785g00002 483 SMART AAA_5 246 380 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1785g00002 Pral-Chr1785 2915 6013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1785g00002 5 110 MAP Kinase Kinase Kinase AT1G14000 32.075 2.73e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1785g00002 - - cave:132166024 814.298