Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral1781g00003 | ATGGAAGAAGAGGAAAAACAGCTTTTGGAAACTCGAATCAAGGAAGAGAAGGAGGAATCCAAACATGAGCCAGACGAGGCACCAAAGCTTAATGAAAGTCAATTTAGCAAGTTGGATGAGCTTTTAACGCAAACCCAACTTTACTCGGAATTTTTGCTGGAGAAAATGGATGACATCACACTTAATGGCGGTGAACAAGAGGGCCAACAAGAGGAGGAACCGGTTGAGAAAAAGAGGGGCCGTGGCTCAAAAAGAAGAGCAAAATCAGAATACAATAATAAGAAAGCCAAAAGGGCAGTAGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGAGTGCTGAAGATATGAACCTGACGGAAGAGGAAAGAATTGATAAGGAACAGAAAGAGCTCATACCTCTGTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATCGGTTTCCTTGCACATCTGAAAGGGAAGGGTTTGGATGGCCCATATTTGATAATTGCTCCTCTATCAACCCTTTCTAATTGGATGAGTGAAATTTCTCGGTTTGCTCCAACACTCACTGCAATTATTTACCATGGTGACAAGAAGGACAGAGATGAGATTCGAAGGAAGCATATGCCTAGAACGATTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGATGCTAAGAAATATCTCAGGTTCTACCATTGGAAATATGTTGTAATTGACGAGGGACACAGGCTCAAAAACTCCAAATGCAAATTAGTCCAGATGTTGAAATTCTTGCCCGTTGAAAATAAACTTCTTTTAACTGGGACACCTCTTCAGAATAACCTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAACTAGAAGAAGGAAGAAGAGCTCAGGTGGTAGCTAAGCTCCATGCCATCTTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATAATTATATATGCCAGTATGACTGAACATCAGAAGAATTTTCAGGAACATTTAATTAATAAGACATTGGAGAAATATTTTCGTGAAAAATCTGCAGTGGGACGTGCTTCCAAAAATCTTCGTAATCTGGTCATTCAGCTTAGAAAGAACTGTAATCATCCTGACCTCTTAGAGTCAGCCTTCGATGATTCGTTTCTCTATCCACCTGTCGATGAGATAGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGTCTGTTGGCTCGTTTATTTGCACGGAAGCACAAAGTTCTAATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAGGGGCCTTGAAGTCTGCAGAATTGATGGCAGTGTAAAGCTAGATGAGAGGAAAAGACAGATTCAGGAGTTCAATGATGTGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGGGGATTGGGAATCAACCTTACTGCAGCTGATACTTGTATCATTTATGACAGTGATTGGAATCCTCAGATTGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAACCTGTTCATGTTTACAGGCTTGCTACAGCTCACTCCGTGGAGGGTCGCATGTTGAAAAGGGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTCATCAAGAACGGATGAAGCCCAACTCAATGGATAACAAAGAGGATGAGGAATTGTTGGCATTGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTAGAGCAGCTTTTGGATCGCAGTGATCTTGTCTCTGGTAACTTAAATTGTCCGAGCAAAATTCCTCTTAAAGGGCCTGGATGGGAGGTGGTGATTCCAACTGGGAGCATGCTTTCTACTCTTAACAGCTAA | 2103 | 0.4123 | MEEEEKQLLETRIKEEKEESKHEPDEAPKLNESQFSKLDELLTQTQLYSEFLLEKMDDITLNGGEQEGQQEEEPVEKKRGRGSKRRAKSEYNNKKAKRAVAAMLTRSKESESAEDMNLTEEERIDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWMSEISRFAPTLTAIIYHGDKKDRDEIRRKHMPRTIGPKFPIVITSYEVALNDAKKYLRFYHWKYVVIDEGHRLKNSKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEGRRAQVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYASMTEHQKNFQEHLINKTLEKYFREKSAVGRASKNLRNLVIQLRKNCNHPDLLESAFDDSFLYPPVDEIVEQCGKFRLLDRLLARLFARKHKVLIFSQWTKILDIMDYYFSERGLEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQIDLQAMDRCHRIGQTKPVHVYRLATAHSVEGRMLKRAFSKLKLEHVVIGKGQFHQERMKPNSMDNKEDEELLALLQEEESAEDKAIQTDISDEDLEQLLDRSDLVSGNLNCPSKIPLKGPGWEVVIPTGSMLSTLNS | 700 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral1781g00003 | 700 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Pral1781g00003 | 700 | Pfam | Helicase conserved C-terminal domain | 465 | 576 | IPR001650 | - | |
Pral1781g00003 | 700 | Pfam | SNF2-related domain | 143 | 440 | IPR000330 | GO:0005524|GO:0140658 | |
Pral1781g00003 | 700 | FunFam | ATP-dependent DNA helicase DDM1 | 134 | 379 | - | - | |
Pral1781g00003 | 700 | Coils | Coil | 1 | 21 | - | - | |
Pral1781g00003 | 700 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 152 | 320 | IPR014001 | - | |
Pral1781g00003 | 700 | SMART | helicmild6 | 492 | 576 | IPR001650 | - | |
Pral1781g00003 | 700 | SMART | ultradead3 | 136 | 331 | IPR014001 | - | |
Pral1781g00003 | 700 | CDD | SF2_C_SNF | 452 | 586 | - | - | |
Pral1781g00003 | 700 | MobiDBLite | consensus disorder prediction | 59 | 98 | - | - | |
Pral1781g00003 | 700 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 14 | 644 | - | - | |
Pral1781g00003 | 700 | Gene3D | - | 376 | 674 | IPR027417 | - | |
Pral1781g00003 | 700 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 466 | 622 | IPR001650 | - | |
Pral1781g00003 | 700 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 372 | 666 | IPR027417 | - | |
Pral1781g00003 | 700 | Gene3D | - | 141 | 371 | IPR038718 | - | |
Pral1781g00003 | 700 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Pral1781g00003 | 700 | Coils | Coil | 110 | 130 | - | - | |
Pral1781g00003 | 700 | FunFam | Chromatin complex subunit A 106 | 380 | 607 | - | - | |
Pral1781g00003 | 700 | MobiDBLite | consensus disorder prediction | 70 | 95 | - | - | |
Pral1781g00003 | 700 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 108 | 370 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral1781g00003 | Pral-Chr1781 | 13394 | 18974 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral1781g00003 | 126 | 597 | RAD5 or RAD16-like Gene Family | AT3G16600 | 25.087 | 5.04e-33 | 133 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Pral1781g00003 | SNF2_N | 4.7e-66 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral1781g00003 | K19001 | - | cave:132188478 | 1105.12 |