LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1781g00002	ATGGAGAACGGAGTGAAGAGCAATGGAGATACAAAGTCACCGACTTTGGTAGAAAAGACTGAGATGGAGACAGAGGAAGTAGATGTTAAGAATGACGAGCCTTCTTTTATATCAAGGTCAATGGAAGAAGAGGAAAAACAGCTTTTGGAAACTCGAATCAAGGAAGAGAAGGAGGAATCCAAACATGAGCCAGACGAGGCACCAAAGCTTAATGAAAGTCAATTTAGCAAGTTGGATGAGCTTTTAACGCAAACCCAACTTTACTCGGAATTTTTGCTGGAGAAAATGGATGACATCACACTTAATGGCGGTGAACAAGAGGGCCAACAAGAGGAGGAACCGGTTGAGAAAAAGAGGGGCCGTGGCTCAAAAAGAAGAGCAAAATCAGAATACAATAATAAGAAAGCCAAAAGGGCAGTAGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGAGTGCTGAAGATATGAACCTGACGGAAGAGGAAAGAATTGATAAGGAACAGAAAGAGCTCATACCTCTGTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATCGGTTTCCTTGCACATCTGAAAGGGAAGGGTTTGGATGGCCCATATTTGATAATTGCTCCTCTATCAACCCTTTCTAATTGGATGAGTGAAATTTCTCGGTTTGCTCCAACACTCACTGCAATTATTTACCATGGTGACAAGAAGGACAGAGATGAGATTCGAAGGAAGCATATGCCTAGAACGATTGGCCCAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGATGCTAAGAAATATCTCAGGTTCTACCATTGGAAATATGTTGTAATTGACGAGGGACACAGGCTCAAAAACTCCAAATGCAAATTAGTCCAGATGTTGAAATTCTTGCCCGTTGAAAATAAACTTCTTTTAACTGGGACACCTCTTCAGAATAACCTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAACTAGAAGAAGGAAGAAGAGCTCAGGTGGTAGCTAAGCTCCATGCCATCTTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATAATTATATATGCCAGTATGACTGAACATCAGAAGAATTTTCAGGAACATTTAATTAATAAGACATTGGAGAAATATTTTCGTGAAAAATCTGCAGTGGGACGTGCTTCCAAAAATCTTCGTAATCTGGTCATTCAGCTTAGAAAGAACTGTAATCATCCTGACCTCTTAGAGTCAGCCTTCGATGATTCGTTTCTCTATCCACCTGTCGATGAGATAGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGTCTGTTGGCTCGTTTATTTGCACGGAAGCACAAAGTTCTAATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAGGGGCCTTGAAGTCTGCAGAATTGATGGCAGTGTAAAGCTAGATGAGAGGAAAAGACAGATTCAGGAGTTCAATGATGTGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGGGGATTGGGAATCAACCTTACTGCAGCTGATACTTGTATCATTTATGACAGTGATTGGAATCCTCAGATTGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAACCTGTTCATGTTTACAGGCTTGCTACAGCTCACTCCGTGGAGGGTCGCATGTTGAAAAGGGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTCATCAAGAACGGATGAAGCCCAACTCAATGGATAACAAAGAGGATGAGGAATTGTTGGCATTGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTAGAGCAGCTTTTGGATCGCAGTGATCTTGTCTCTGGTAACTTAAATTGTCCGAGCAAAATTCCTCTTAAAGGGCCTGGATGGGAGGTGGTGATTCCAACTGGGAGCATGCTTTCTACTCTTAACAGCTAA	2223	0.4125	MENGVKSNGDTKSPTLVEKTEMETEEVDVKNDEPSFISRSMEEEEKQLLETRIKEEKEESKHEPDEAPKLNESQFSKLDELLTQTQLYSEFLLEKMDDITLNGGEQEGQQEEEPVEKKRGRGSKRRAKSEYNNKKAKRAVAAMLTRSKESESAEDMNLTEEERIDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWMSEISRFAPTLTAIIYHGDKKDRDEIRRKHMPRTIGPKFPIVITSYEVALNDAKKYLRFYHWKYVVIDEGHRLKNSKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEGRRAQVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYASMTEHQKNFQEHLINKTLEKYFREKSAVGRASKNLRNLVIQLRKNCNHPDLLESAFDDSFLYPPVDEIVEQCGKFRLLDRLLARLFARKHKVLIFSQWTKILDIMDYYFSERGLEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQIDLQAMDRCHRIGQTKPVHVYRLATAHSVEGRMLKRAFSKLKLEHVVIGKGQFHQERMKPNSMDNKEDEELLALLQEEESAEDKAIQTDISDEDLEQLLDRSDLVSGNLNCPSKIPLKGPGWEVVIPTGSMLSTLNS	740

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1781g00002	740	SMART	helicmild6	532	616	IPR001650	-
	Pral1781g00002	740	SMART	ultradead3	176	371	IPR014001	-
	Pral1781g00002	740	MobiDBLite	consensus disorder prediction	1	15	-	-
	Pral1781g00002	740	Pfam	Helicase conserved C-terminal domain	505	616	IPR001650	-
	Pral1781g00002	740	Gene3D	-	181	411	IPR038718	-
	Pral1781g00002	740	MobiDBLite	consensus disorder prediction	103	138	-	-
	Pral1781g00002	740	FunFam	ATP-dependent DNA helicase DDM1	174	419	-	-
	Pral1781g00002	740	Coils	Coil	39	61	-	-
	Pral1781g00002	740	MobiDBLite	consensus disorder prediction	16	73	-	-
	Pral1781g00002	740	CDD	SF2_C_SNF	492	626	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1781g00002	Pral-Chr1781	13162	18974	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1781g00002	166	637	RAD5 or RAD16-like Gene Family	AT3G16600	25.260	5.80e-33	133

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Pral1781g00002		SNF2_N	5.4e-66	CL0023

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1781g00002	K19001		-	cave:132188478	1122.46

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