Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1780g00005 ATGGATCCACCCCCGCCGGCACCACCTTCAACGGCACCCGTCCAAGCAGCTCCGATCACAACAAACGCCACAAGTGCTCAGTTGAACTGCCCCGAGTCGGTGGAGAGCTCTCCTCGGTCCCGCATTGTTGAAAACTGGGTTGATGAGCCGCTCCCTGCTGTTCCTGGAGCTAAGCTTCGCTTGATGTGCAGTTATGGCGGCCACATCATGCCGCGTCCACATGACAAAACGCTTTGTTACATCGGCGGCGACACTCGGATCGTCGTCGTCGATCGACATTCCTCCCTCAAGGAGCTCTGTGGCCGGCTCTCTCGTACTCTGCTGAATGGCCGACCCTTCACGCTCAAGTACCAACTCCCCCATGAAGATCTCGACAATCTCATATCAGTCTCCACAGACGAAGACTTAGAGAACATGATCGAAGAACACGAGCGTTTAACGGCTGCTTCTCCTCCTAGGCCCACAAGGTTAAGGCTTTTTCTCTTTTTCTCTAAGCCGGAGTCTACAGTGTCAATGGGCTCACTTCTTGATGATGCCAAGTCGGAGACATGGTTCGTGGATGCTCTCAACAATTCTGGGATTCTCACTCGGGGAGTGTCAGATTCTGCCGCTGTTGAAGGCGTGGTGAACCTTGACAAGGTTCCAGCCAGTAATTCCAGCAGTAATTTGGAAGCTCAAGCTACAGAGCTTCAGACTGATAGCAACAGACAGGTCAAGAATTTGCCTGAGGTTCATTCCTTGCCAGACTCCCCTCTGGTGGATAACAGTTCTTCATATGGGTCTTCTTCTTCATCCCCTTCAATGGCTAACCTGCCTCCAATTCGGGTTCGTATTGATGAAATTGGTAACAGCAGGCTGCAACAAGAACAGAGGCCAGGGATTGAGGAACAGTTAGCGCAAATGACCTTTGTTGCTAGTGGGATTAAGCAAGATGAAGGGTATGCTATGACTATGCTGTCTGCTCCTATGCCTACAATCCCTGCGCCTATGACCATGTCTTCACCAGCTTTGGTGACCAGTGATAATATGAATCGGGTCATCTCTGATGATGAAAGATCAGATCAAGGAGCACCTGCTGCGCTTCGAAAGCCTCCATTGCCTTTGCAGCTTGCACAACCAAGGACTAGTGGTGGTTTAAACTTGCCTTCTCCAGATTCAGTGGCAAGTGATAGCAGCATTGCATCTGCAGCCTCTTTCTCAAGGTCTGTTTACTATCAGGATCAAGTCCAAGCTGCATATGCAGATCAGAAAGCACCAGCACTATCACATTCTAAGAATGACATGTCAGATCCCAATGCTGGATACCAAAGAGAACGAGTTCAGGATTCTAATTACACAGTACCCCCACCGTTGGATCAAAGTCAGCAAATCCAGCAGCAGCAACATCAACAGCAACAACAACAACAATTTGTTCATGCCAGTACCCACTATATCCCCCACACAGCAGCCACAGGTCAAGTTCCAATGTCTTCCTACTACCCAGTTTATGCCACACCTTCACAGCAGCAGATTCCTCATCCAATTAATCAGCAGTACCCAGTTTATGTAATGCCTGTAGGACATGCTCAGCCTTACAATATGACTATGCAAGCTGACCCAAATGTGATGGCCTCAAGCAGGCCATTAATATCCCAAAGTGTTGCTGGTACTCCACCTGTTTACCCCACAAAGCCAGCCACTCCTTCCATGCCTGAGGTGGCTGCTCAGACTGTTTATAAAGCACCTGTGCCCCCCACTCCAGCATTTGTTCAAATGCCTTCCGGGCAATATCAGCAGCAACAGTATGTGGGAGTACCTCAAATCCATCACCAACCACAGTCCATAACAGTTGCTTCCTCTGCTGCTTCTGCTCCGGTTCCTGCTACCACAAGTAATTATGGTTATGATTATGGTGGACCTGCGCAAGAACAAGCATATTACATACAACAGCAGCAAACTGCTCCTTTGCCTTCTCAATACCAGTCCATGACCCCCGCGGCAGCGGCGGCATTTTCAGATGCATCAAAGCAATTTCCTGGAGAGAGCATTCAGCAGCCAAACAGAGCCACACAGCCATTGTGA 2061 0.4949 MDPPPPAPPSTAPVQAAPITTNATSAQLNCPESVESSPRSRIVENWVDEPLPAVPGAKLRLMCSYGGHIMPRPHDKTLCYIGGDTRIVVVDRHSSLKELCGRLSRTLLNGRPFTLKYQLPHEDLDNLISVSTDEDLENMIEEHERLTAASPPRPTRLRLFLFFSKPESTVSMGSLLDDAKSETWFVDALNNSGILTRGVSDSAAVEGVVNLDKVPASNSSSNLEAQATELQTDSNRQVKNLPEVHSLPDSPLVDNSSSYGSSSSSPSMANLPPIRVRIDEIGNSRLQQEQRPGIEEQLAQMTFVASGIKQDEGYAMTMLSAPMPTIPAPMTMSSPALVTSDNMNRVISDDERSDQGAPAALRKPPLPLQLAQPRTSGGLNLPSPDSVASDSSIASAASFSRSVYYQDQVQAAYADQKAPALSHSKNDMSDPNAGYQRERVQDSNYTVPPPLDQSQQIQQQQHQQQQQQQFVHASTHYIPHTAATGQVPMSSYYPVYATPSQQQIPHPINQQYPVYVMPVGHAQPYNMTMQADPNVMASSRPLISQSVAGTPPVYPTKPATPSMPEVAAQTVYKAPVPPTPAFVQMPSGQYQQQQYVGVPQIHHQPQSITVASSAASAPVPATTSNYGYDYGGPAQEQAYYIQQQQTAPLPSQYQSMTPAAAAAFSDASKQFPGESIQQPNRATQPL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1780g00005 686 ProSiteProfiles PB1 domain profile. 58 162 IPR000270 GO:0005515
Pral1780g00005 686 MobiDBLite consensus disorder prediction 1 27 - -
Pral1780g00005 686 MobiDBLite consensus disorder prediction 373 390 - -
Pral1780g00005 686 MobiDBLite consensus disorder prediction 443 466 - -
Pral1780g00005 686 MobiDBLite consensus disorder prediction 215 272 - -
Pral1780g00005 686 SUPERFAMILY CAD & PB1 domains 74 173 - -
Pral1780g00005 686 MobiDBLite consensus disorder prediction 670 686 - -
Pral1780g00005 686 SMART PB1_new 73 162 IPR000270 GO:0005515
Pral1780g00005 686 MobiDBLite consensus disorder prediction 650 686 - -
Pral1780g00005 686 PANTHER OS05G0427100 PROTEIN-RELATED 31 504 - -
Pral1780g00005 686 MobiDBLite consensus disorder prediction 250 270 - -
Pral1780g00005 686 MobiDBLite consensus disorder prediction 215 241 - -
Pral1780g00005 686 Pfam PB1 domain 75 162 IPR000270 GO:0005515
Pral1780g00005 686 Gene3D - 77 163 - -
Pral1780g00005 686 CDD PB1_UP2 62 162 - -
Pral1780g00005 686 MobiDBLite consensus disorder prediction 348 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1780g00005 Pral-Chr1780 41006 43447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1780g00005 58 191 MAP Kinase Kinase Kinase AT5G57610 45.588 4.42e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1780g00005 - - qsa:O6P43_008537 712.99