Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1780g00003 ATGCCTGTTGTTTCAGATGCTTCAGCAACTGCAGAACGCATAAAATGCAGAAGGCCAAGAAGCCATTTGGGTCATCTCATTCAAGAAGCAGATCCGAACCCGCCAATCCCTTCGATAATCGAGTTCACTCGCTGCAAATCAACCATTTCGTCTCTTCTTCTCTCTACTTTCTCCAACAACGCGTCGAATGAGAGTGTACAGGGTAACGGAGTCAACATCGGCGGCAGTGGCAGCGGCCGTAGCAAGAAGAAGAACAATTTCTCCGCGGCTGCAACCTTCAGAGGACTCGGATGCACCGCCGGTGCGTCGCAGCAGGTTTCGGTTCCGGCGGTGATTCGGTCGTCGGCGGACTGGCAAGGAAAGAAGGCTAGAAAGAAGAAGCATAAAAGAAATGGCACCAAGACCTGTCCTGGGGCTGTTGATGGTTCTGGTTCTGCTAATTGCGTTGATTTTCAAGACGTCTGGTGTGGTCCTGGAATTGGGTTTTCGGCCGATGCTGCTGCGTCTGTTGATTGCGTCGTGGCGAGGAAGAATGTTTCTTCGAGAGGGAAGATTGATGTAGAGAGGATGACTCACAGGGAGCGTGTATCCTATCTTGGAAGACGAACAGTTAACCCAGAAACCATCTCGTTTCTGGATAATGATCCTGATATCTTCCCAACGCGTCCTCCTGCTCCTGATTCATATGCATCTTCAAGATACTATCGTCATCTTCGACATCCTTCATCCGAAGGTTTTGCTGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGAGGAATGTTAGATTCACATGACCAGTTTAGGGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAACTTCTTGAGCTTGAAGAGAAGATTGGTTTTGTCAACACTGGTCTCAAAGAAGACGAGATAGGATGCCACATAAGGAAGATTCAATATCCATTTTTGAGTGAAGCATTGAAGCACCATATTAACAAAAAGTGCAGCATTTGTCAGGAAGAATATGAAGGAGATGATGAGGTGGGGAAGCTAAAGTGTGAACACAGCTATCACTTTGAGTGCATCAGACAATGGCTTGCACAGAAAAATTTCTGCCCAGTCTGTAAGCAAGAAGTTGTGGTTCGTCACTAG 1125 0.4684 MPVVSDASATAERIKCRRPRSHLGHLIQEADPNPPIPSIIEFTRCKSTISSLLLSTFSNNASNESVQGNGVNIGGSGSGRSKKKNNFSAAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKARKKKHKRNGTKTCPGAVDGSGSANCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSSRGKIDVERMTHRERVSYLGRRTVNPETISFLDNDPDIFPTRPPAPDSYASSRYYRHLRHPSSEGFAEIMMLQGGLLMGGMLDSHDQFRDWRLDVDNMSYEQLLELEEKIGFVNTGLKEDEIGCHIRKIQYPFLSEALKHHINKKCSICQEEYEGDDEVGKLKCEHSYHFECIRQWLAQKNFCPVCKQEVVVRH 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1780g00003 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 372 IPR013083 -
Pral1780g00003 374 Pfam Ring finger domain 325 367 IPR001841 -
Pral1780g00003 374 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Pral1780g00003 374 SUPERFAMILY RING/U-box 325 372 - -
Pral1780g00003 374 FunFam E3 ubiquitin-protein ligase rnf12-A 293 372 - -
Pral1780g00003 374 MobiDBLite consensus disorder prediction 117 136 - -
Pral1780g00003 374 SMART ring_2 326 366 IPR001841 -
Pral1780g00003 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 111 370 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1780g00003 Pral-Chr1780 29054 33324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1780g00003 2 281 C3H Transcription Factor Family AT1G73760 39.145 2.68e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1780g00003 - - qsa:O6P43_005125 501.901