Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1776g00007 ATGATTTCAAGGGCCACAGCTTCCGGTTTCCCAGATCTCTCTCAAGGCCTGCACAATATATTTCCTGCTGCTGCTGCTGTTAATCTGGTTTCACCCTCTGTTGAATCAGCTCCCTCTCAATCAACCTCGCTCATGTTCAATCTCTCCCTCCTCAAAGACAGGCTCACTCATGTCCAGACACTCGCGGGTATTCTTATTTCCTCGGATCAGACCTTACCAGACTCTACCTGTACAACCTTAGCCAGTATGAATTCTATCATCCAGGAATTCATTGTCACTGCCTCCTCCATGGTGCTCACGTGCCAACACATGTTCCTTAGTTTCTCTCCACCACCAGGTACCCATTGCACTGAATCCAACTTTGGCCATTATACAAGTATGCACAGTAGTAATAATACGAATAACATAGCTCCACACAGAGAGCAAGGTATCTTCTCTAGTCCTGATGATCAAACCTTGAACTGGTTCGGTGGTGAAAGCTATGATAACAACAATAACTGCGTTAATAATCTCAAGGATGATGATCCGAGTGCTGGGCTTAGTGAAACGAAGAGAGAATTGTCTCAAAGGGATGAGACGGATGAACCAAAGAACGAGGACATAATCGAATTGGATGCTGCTGATTTGCTGGCCAAGTACACACATTACTGTCAAATTTGCGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGACAAGTGCCGCCTTGAGCAACCCGATGAAGAATAGAGACAAAGAATGTTCGATGAGCACGTTCAGGCCTAAGAAATACTCATGTCCGCAGGAAGGATGTAGGTGGAATCAGAAGCATGCCAAGTTTCAACCGTTGAAGTCAATGATATGTGTGAAGAATCATTACAAGAGAAGTCATTGTCCGAAGATGTACGTGTGCAAAAGGTGCAATTTGAAGCATTTCTCAGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGTTCGTGTGGTACAACGTTTTCAAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGCCGGGCATGCTCCAGCTGTCAGTGGCTTGTCCTATTCTGGAAAATTGGTCGAGCAGCAGGCATTGCAAATGCAGGAAGATGGCGGTAGTGCAAGATCATATGTTTGA 1173 0.4552 MISRATASGFPDLSQGLHNIFPAAAAVNLVSPSVESAPSQSTSLMFNLSLLKDRLTHVQTLAGILISSDQTLPDSTCTTLASMNSIIQEFIVTASSMVLTCQHMFLSFSPPPGTHCTESNFGHYTSMHSSNNTNNIAPHREQGIFSSPDDQTLNWFGGESYDNNNNCVNNLKDDDPSAGLSETKRELSQRDETDEPKNEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNRDKECSMSTFRPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKHFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFAGHAPAVSGLSYSGKLVEQQALQMQEDGGSARSYV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1776g00007 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 242 IPR013087 -
Pral1776g00007 390 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Pral1776g00007 390 FunFam Zinc finger protein 574 214 239 - -
Pral1776g00007 390 SUPERFAMILY beta-beta-alpha zinc fingers 213 240 IPR036236 -
Pral1776g00007 390 MobiDBLite consensus disorder prediction 166 198 - -
Pral1776g00007 390 Pfam Zinc finger, C2H2 type 215 237 IPR013087 -
Pral1776g00007 390 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 37 366 IPR044300 GO:0010044|GO:0010447
Pral1776g00007 390 MobiDBLite consensus disorder prediction 177 198 - -
Pral1776g00007 390 Gene3D Classic Zinc Finger 208 272 - -
Pral1776g00007 390 SMART c2h2final6 215 237 IPR013087 -
Pral1776g00007 390 SMART c2h2final6 268 301 IPR013087 -
Pral1776g00007 390 SMART c2h2final6 306 328 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1776g00007 Pral-Chr1776 33677 35037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1776g00007 41 361 C2H2 Transcription Factor Family AT5G22890 50.144 4.42e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1776g00007 zf-C2H2 0.0001 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1776g00007 - - pcin:129316246 662.529