LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1776g00002	ATGGGTCAGATCCAGTACTCTGAGAAATACTTCGATGATACTTACGAGTACAGGCATGTGGTCCTGCCTCCTGAAGTGGCCAAATTGCTTCCCAAGAATCGGCTTCTCTCCGAAAATGAGTGGCGTGCAATTGGGGTTCAACAGAGCCGCGGTTGGGTTCACTATGCAATTCATCGTCCTGAGCCACACATAATGCTTTTCAGGAGGCCCCTGAACTATCAGCAGCAGCAGGAAAATCAGGCCCAGCAAAACATGGTTGCCGCCAAGTGA	270	0.5037	MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQNMVAAK	89

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1776g00002	89	Pfam	Cyclin-dependent kinase regulatory subunit	4	70	IPR000789	GO:0016538
	Pral1776g00002	89	Gene3D	-	1	84	IPR036858	GO:0016538
	Pral1776g00002	89	SMART	CKS_2	3	72	IPR000789	GO:0016538
	Pral1776g00002	89	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	3	86	-	-
	Pral1776g00002	89	Coils	Coil	71	89	-	-
	Pral1776g00002	89	FunFam	Cyclin-dependent kinases regulatory subunit	1	84	-	-
	Pral1776g00002	89	SUPERFAMILY	Cell cycle regulatory proteins	1	82	IPR036858	GO:0016538
	Pral1776g00002	89	ProSitePatterns	Cyclin-dependent kinases regulatory subunits signature 1.	6	24	IPR000789	GO:0016538
	Pral1776g00002	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	3	17	IPR000789	GO:0016538
	Pral1776g00002	89	PRINTS	Cyclin-dependent kinase regulatory subunit signature	40	54	IPR000789	GO:0016538

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1776g00002	Pral-Chr1776	16237	17870	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1776g00002	1	82	Core Cell Cycle Gene Families	AT2G27970	91.463	8.33e-53	157

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1776g00002	K02219		-	zju:107410685	174.481

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