Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1775g00005 ATGTCGACTTCAAGGAGGAGCAAGGGTCGCCAGAAGATTGAGATGAAGAAGATGAGCAATGAGAGCAATCTGCAGGTAACTTTCTCGAAGCGTCGCACTGGGCTTTTCAAGAAAGCTAGTGAGCTATGTACTCTTTGTGGTACTGAGGTTGCTCTCATCGTCTTCTCCCCCGGAGATAAGGTCTTCTCCTTCGGCCATCCCAGCGTCGACACGGTGGTGGATCGCTACCTCACGCGAGCCCCACCGCCACAGACCTCCGGCACCATGCAACTCATCGAGGCTCACCGCAACGCCAACGTTCGCGACCTGATCACCCAGTTCACTCAAGTCTCTGCCCAGCTCGACAACGAGAAGAAGCGCACTGATGAATTGAATCATATGCGAAAGGCCACTCAAGGTCAGTGCTGGTGGGCGGCCCCAATAGAGGAGATGACGAGGTCACAGCTTGAGGAGTTCAAGGCGGCGTTGGAGGAGCTAAAGAGGAGTGTGACGAGACAGGCTGATAGGATGGTGCTGATCCAGAGTGCAAGTAATAACTCATCGAATCAGTTTTTGGTCGGAGGTTCATCTTCGAATGCGGTGGCTCCGCCGCCTCCACTGCCACATCAGTTGTTTCAGCCACCGCCAGCGGTGGTTCAAAATCCTCCTGGGTTTGATGGCAGTATGGTGCCACCACACCATGGATTTGGAGCACCAGGGTTTTACTGA 708 0.541 MSTSRRSKGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCGTEVALIVFSPGDKVFSFGHPSVDTVVDRYLTRAPPPQTSGTMQLIEAHRNANVRDLITQFTQVSAQLDNEKKRTDELNHMRKATQGQCWWAAPIEEMTRSQLEEFKAALEELKRSVTRQADRMVLIQSASNNSSNQFLVGGSSSNAVAPPPPLPHQLFQPPPAVVQNPPGFDGSMVPPHHGFGAPGFY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1775g00005 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Pral1775g00005 235 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Pral1775g00005 235 PANTHER MADS BOX PROTEIN 10 166 - -
Pral1775g00005 235 MobiDBLite consensus disorder prediction 1 20 - -
Pral1775g00005 235 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Pral1775g00005 235 Gene3D - 88 186 - -
Pral1775g00005 235 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Pral1775g00005 235 Coils Coil 142 169 - -
Pral1775g00005 235 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Pral1775g00005 235 SUPERFAMILY SRF-like 9 94 IPR036879 GO:0003677|GO:0046983
Pral1775g00005 235 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Pral1775g00005 235 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Pral1775g00005 235 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Pral1775g00005 235 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1775g00005 Pral-Chr1775 17233 18029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1775g00005 5 193 Type I MADS-box Gene Family AT5G60440 58.639 1.97e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral1775g00005 SRF-TF 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1775g00005 - - gmx:100794751 258.455