Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1772g00012 ATGGAGAACATTTCTGTGCTGTCCAACAAGGAAGAAGTTCAGATGAATTTGCCTCCTGGCTTTCGGTTTTACCCAACAGATGAAGAGCTAATAACTTATTATCTGTTCAAGAAGGTCACAAATACTAACTTCTCTGCTATTGCCATTGGAGAAGTGGATATACACAAGTCTGAACCTTGGGACTTGCCGTGGAAAGCCAAAATGGGAGAGGAAGAGTGGTATTTTTTCTCCATGAGAGACAACAAATACCAAATTGGTTTGAGAACCAACAGAGCCACTAACGCTGGGTACTGGAAGTCCACAGGGAAAGATGGGGAGATTTACAGTGGAAAATCGTTAATAGGGAAGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCACCAAACGGGGACAAAACCAACTGGGTCATGCATGAATACAGATTAGATGGAAAATTCTCTGTCCACAACTCCTCCAAAACTGTAAAGAACGAGAGGGTGATTTGCAGGGTATTTCGGAAGGCTTCAGGGTGCAAGAAAACCCACATTTCTGATATAAAGAGGTTGGAATCAATGGAAAATGGATTGGGTTCCTCAGTTCCAATTTCACCACCTGTCGAAGATTATTCTCCTTGTTACATCGGCTCAACGGGACCTACTGTGAGTACTGATTCGGCACACGTGCCCTGCTTCTCCTCAGGAGGGATTTTTAATTCTGCAGGAAACTCCCTTTTGGGGATTTGCTCGAATTCTCGAGAACTTTTGCCAATAATCCCTCTTCATGAAACGCTGTTTTCTGCTGAACCCATTCAAGCTCAGATGAATATGCCTCTATCACATTCTGCCTTTACTGTGCAGGAACAGAGCTTGCTTGGTGTTGATTGTGCTTTTGAGGACCATGGTTTTATATCAGATACGGATCAAATGGTGAGTGTTTCGCATGAAACAGGGCTAACCACCAACGACATGAATCCGGAGATCTCTTCTGTGATACCAAGTTTTGATGATCAGCCAAACCCATCTGCTTCTCCTGCAGCACCATCACCATTGGAGCTTGATAACTTCTGGAGTTACTAG 1056 0.4356 MENISVLSNKEEVQMNLPPGFRFYPTDEELITYYLFKKVTNTNFSAIAIGEVDIHKSEPWDLPWKAKMGEEEWYFFSMRDNKYQIGLRTNRATNAGYWKSTGKDGEIYSGKSLIGKKKTLVFYKGRAPNGDKTNWVMHEYRLDGKFSVHNSSKTVKNERVICRVFRKASGCKKTHISDIKRLESMENGLGSSVPISPPVEDYSPCYIGSTGPTVSTDSAHVPCFSSGGIFNSAGNSLLGICSNSRELLPIIPLHETLFSAEPIQAQMNMPLSHSAFTVQEQSLLGVDCAFEDHGFISDTDQMVSVSHETGLTTNDMNPEISSVIPSFDDQPNPSASPAAPSPLELDNFWSY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1772g00012 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 254 - -
Pral1772g00012 351 MobiDBLite consensus disorder prediction 312 334 - -
Pral1772g00012 351 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Pral1772g00012 351 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Pral1772g00012 351 MobiDBLite consensus disorder prediction 312 341 - -
Pral1772g00012 351 FunFam NAC domain-containing protein 100-like 26 171 - -
Pral1772g00012 351 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Pral1772g00012 351 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1772g00012 Pral-Chr1772 61575 62784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1772g00012 15 351 NAC Transcription Factor Family AT5G07680 50.877 2.60e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral1772g00012 NAM 3.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1772g00012 - - pcin:129309030 412.149