Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1759g00001 ATGGATTTAAGAGAATATTACAGTGCAGAAGACAAGAGTATGAACTTTCATGCTCCCGCTTTCTTTGAATGGCTCAAACCGTCTTCATATCCTCCTCCTCCTCCTCCTTCATCTTCTGTGATTCACAAAGAGACTATTCAGTTTTTGCCAATTTTAACTGAAAAGCCCTCAAAAGAGGAAGGCTATGGTACTGTTGGGGTAATTAAAGAAGAGAAGGACGACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGATTACCTAACACACAAGGTTTTGAGGCTGATGATGATCAGAAGAATAAGAAAGTTACCGATGTGAAGGAAGAAGAAGTGGTGAATAATAGAAGCTTTCAAGAGTGCTCTAAGAATTCTAACACAGAGAGAAGATTCTGGATACCAACTCCTGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGTTCCATATGCAGCAAAACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCACGGATCAGAGTACAGAAAAGGAGCAGAATCACTGAAAGGAACACAACCAGCGGCAATGCTGAGACTGCCATGTTACTGTTGTGCCCAAGGCTGCAAAAACAACATCAACCATCCAAGAGGCAAGCCTCTTAAGGACTTCAGAACCCTCCAAACCCATTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGCGCCAAACCCTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTCTGGTATTGCTCCTGCGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACACCCCTCGTTTTGAAGATGATGATGACAAGGAATATTCCATCACTACTACTTCAGCCTCTCAAGAATGTTAA 915 0.4284 MDLREYYSAEDKSMNFHAPAFFEWLKPSSYPPPPPPSSSVIHKETIQFLPILTEKPSKEEGYGTVGVIKEEKDDVDEQVTVALHIGLPNTQGFEADDDQKNKKVTDVKEEEVVNNRSFQECSKNSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGAESLKGTQPAAMLRLPCYCCAQGCKNNINHPRGKPLKDFRTLQTHFKRKHGSKPFVCRKCAKPFAVKGDWRTHEKNCGKFWYCSCGSDFKHKRSLKDHIRSFGKGHTPRFEDDDDKEYSITTTSASQEC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1759g00001 304 SUPERFAMILY beta-beta-alpha zinc fingers 137 169 IPR036236 -
Pral1759g00001 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Pral1759g00001 304 PANTHER ZINC FINGER PROTEIN WIP2 36 292 IPR043584 GO:0003700|GO:0010468
Pral1759g00001 304 Gene3D Classic Zinc Finger 228 278 - -
Pral1759g00001 304 FunFam Zinc finger protein WIP2 199 281 - -
Pral1759g00001 304 Pfam Zinc finger, C2H2 type 146 165 IPR013087 -
Pral1759g00001 304 SMART c2h2final6 146 168 IPR013087 -
Pral1759g00001 304 SMART c2h2final6 230 250 IPR013087 -
Pral1759g00001 304 SMART c2h2final6 193 225 IPR013087 -
Pral1759g00001 304 Gene3D Classic Zinc Finger 145 168 - -
Pral1759g00001 304 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Pral1759g00001 304 SUPERFAMILY beta-beta-alpha zinc fingers 216 250 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1759g00001 Pral-Chr1759 8065 9994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1759g00001 8 283 C2H2 Transcription Factor Family AT1G08290 55.352 1.08e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1759g00001 zf-C2H2 0.00048 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1759g00001 - - gmx:100788451 411.764