Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1742g00008 ATGGAGTTTGCAGTAGCTAAAGCGTTGAAACCCAGTTTACGAAGAGAACTATCCTTTCAACAGAAAACCTTGTGCGAGGAAATTTTGTACTTGAACGGAAACAACGGCGTCTCCGGTGAGGATTTCTCGGTGGATGACCTTCTTGACTTGTCTCACGACGAATTTCAGCACGTGCTTGCTGAAAAGGAAAACGATTTCGAAGACGACGAGGAGAAAAAAGATGGTTCCTTTGTTTCGGATGATGCAAACTCTAACTCTGGCAGTGATTCCGGCACCGCCGATACTGAGTCGGCTTTCGCAGGCGAACTCGCCGTTCCGGCCGATGACTTAGCGGACCTTGAGTGGGTTTCTCACTTTGTAGACGATTCTCTACTCCAGTTCTCGTATCCGCTTTGCTCAGAGCAGTCGAAGGCGGAGAAGCACTCTGCGACGGAGCTTAGAACGGACTTGACGACGGCAAAAACTCCCCGTTTTCCGTCTAAAATCCCGGTGAAAACGAGGAGCACCAAATATAGAAAAGCCAACGCTCGTGTCTGGTCATCCAGCTTAATACTTTTTGTTTCCCGGTCATCTCCAAAGTCTTCCTCGGCTCTCATCTTCGCCGGTGAACCGTCGGCGATGAAGCAGAAAAAGAGGAAACCGGTGGAAGGGGAAACGGGTGGGTCCCAGATTCAGCGTCGGTGCAGTCATTGTCATGTGCAGAAGACTCCACAGTGGAGAACCGGCCCACTAGGCGCCAAAACCCTGTGTAACGCATGCGGGGTCCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCCGCATGCAGCCCAACTTTCTCCAGCGACTTGCACTCAAATAGCCATCGCAAGGTGTTGGAGATTAGGAGGAGGAAGGAGACGGTTGGTCCGGAGGCCGGTTTGACCCAATCACAAATGGTTCAGAGCTTCTGA 936 0.5139 MEFAVAKALKPSLRRELSFQQKTLCEEILYLNGNNGVSGEDFSVDDLLDLSHDEFQHVLAEKENDFEDDEEKKDGSFVSDDANSNSGSDSGTADTESAFAGELAVPADDLADLEWVSHFVDDSLLQFSYPLCSEQSKAEKHSATELRTDLTTAKTPRFPSKIPVKTRSTKYRKANARVWSSSLILFVSRSSPKSSSALIFAGEPSAMKQKKRKPVEGETGGSQIQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSDLHSNSHRKVLEIRRRKETVGPEAGLTQSQMVQSF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1742g00008 311 PIRSF Txn_fac_GATA_plant 13 310 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral1742g00008 311 MobiDBLite consensus disorder prediction 79 95 - -
Pral1742g00008 311 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Pral1742g00008 311 SMART GATA_3 222 276 IPR000679 GO:0006355|GO:0043565
Pral1742g00008 311 FunFam GATA transcription factor 219 305 - -
Pral1742g00008 311 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Pral1742g00008 311 PANTHER GATA TRANSCRIPTION FACTOR 33 298 - -
Pral1742g00008 311 MobiDBLite consensus disorder prediction 61 95 - -
Pral1742g00008 311 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Pral1742g00008 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 285 - -
Pral1742g00008 311 CDD ZnF_GATA 227 275 IPR000679 GO:0006355|GO:0043565
Pral1742g00008 311 Gene3D - 220 295 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1742g00008 Pral-Chr1742 98206 99646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1742g00008 8 310 C2C2-Gata Transcription Factor Family AT5G66320 43.068 1.50e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral1742g00008 GATA 3.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1742g00008 - - qsa:O6P43_002035 328.946