Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1735g00004 ATGGAACTGATGAGAGGTTTAGATAAGGAAATAGAGATGCCATTACCAACCTCTTCAGGCTATAATCCCTCCAATAGGGACTCGTCTTCTTCTCCAACTCTAGCTTCAACAGTAGGCGAAACGAGTAGTGATCAACCTCCTCAAACTTCAGACCACTATCATCTTAATCATCCTCCTCCTTCTCTGCCATCGAACCCACTTCAGCAATTGCAGAGAAACACGAGAGATCCAGATCCGCCAAGCGTAACAGCGATCACAACAATTGCTAGCAGATCAAACCCAGGACCAGCAACAGCGAGGACGATTAGGTACAGAGAATGCTTGAAGAATCATGCGGCGAGCATGGGAGGACACGTAGTGGATGGATGCGGCGAGTTCATGCCAAGTGGAGAAGAAGGCACTCCACAATCCTTGAGATGTGCCGCTTGTGACTGCCACCGCAATTTCCACCGGAAAGAGACCGAAGGTGAACCTCAAACTAATGTTCTCAATTACTACGCCTACCCTCCCAGCAAAAGCAATAACGCACAGAGTAGGATTCTTTCTCCGCAGTTTCCGCCACCCCCTCCTCTTCATCATCATCATCACCATCAACATATGAGATTTTCAGGTGGGTCGTTCCCGCCGTTGATGATGGCCTTCGGCGGAGGCGGCGGGGCGGCGGAGTCTTCAAGCGAAGATCTGAACATGTTTCAGTGTAATGATGTGGGAGGGCAAGGGTCATCAAAGAAAAGGTTTAGGACTAAGTTTAGCCAGGAGCAGAAGGACAGGATGATGGAGTTCGCCGAGAAGTTGGGATGGAGGATCCAGAAACACGACGAACAAGAAGTACAACAGTTTTGTAATCAAGCGGGTGTGAAACGGCAGGTTTTCAAGGTTTGGATGCACAATAACAAACAGGCCATGAAGAAGAAGCAAATCTATCGACTGTTTTTTGTCTCCGCTCTACCCCAGCGAGCCAGGCAGATAAATAGCCCCCCCTAA 984 0.4898 MELMRGLDKEIEMPLPTSSGYNPSNRDSSSSPTLASTVGETSSDQPPQTSDHYHLNHPPPSLPSNPLQQLQRNTRDPDPPSVTAITTIASRSNPGPATARTIRYRECLKNHAASMGGHVVDGCGEFMPSGEEGTPQSLRCAACDCHRNFHRKETEGEPQTNVLNYYAYPPSKSNNAQSRILSPQFPPPPPLHHHHHHQHMRFSGGSFPPLMMAFGGGGGAAESSSEDLNMFQCNDVGGQGSSKKRFRTKFSQEQKDRMMEFAEKLGWRIQKHDEQEVQQFCNQAGVKRQVFKVWMHNNKQAMKKKQIYRLFFVSALPQRARQINSPP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1735g00004 327 Pfam ZF-HD protein dimerisation region 102 154 IPR006456 -
Pral1735g00004 327 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 103 153 IPR006456 -
Pral1735g00004 327 NCBIfam homeobox domain, ZF-HD class 243 300 IPR006455 -
Pral1735g00004 327 ProSiteProfiles 'Homeobox' domain profile. 241 305 IPR001356 GO:0003677
Pral1735g00004 327 SUPERFAMILY Homeodomain-like 234 304 IPR009057 -
Pral1735g00004 327 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 76 300 - -
Pral1735g00004 327 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 104 153 IPR006456 -
Pral1735g00004 327 MobiDBLite consensus disorder prediction 1 98 - -
Pral1735g00004 327 MobiDBLite consensus disorder prediction 66 97 - -
Pral1735g00004 327 FunFam Zinc-finger homeodomain protein 2 232 304 - -
Pral1735g00004 327 MobiDBLite consensus disorder prediction 17 55 - -
Pral1735g00004 327 Gene3D - 232 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1735g00004 Pral-Chr1735 18696 21599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1735g00004 92 307 ZF-HD Transcription Factor Family AT2G18350 53.571 1.08e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral1735g00004 ZF-HD_dimer 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1735g00004 - - qsu:111998832 337.421